STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
copA4Copper-transporting ATPase CopA. (873 aa)    
Predicted Functional Partners:
rrnAC0503
Transcription regulator.
     
 0.885
trxA3
Thioredoxin.
 
 
 
 0.609
trxA5
Thioredoxin.
 
 
 
 0.609
rrnAC1183
Unknown.
     
 0.598
nirK
Nitrite reductase copper containing protein.
 
  
 0.596
malE1
Maltose ABC transporter maltose-binding protein.
      
 0.588
cysT1
Sulfate transport system permease protein.
     
 0.580
zurA
Zinc uptake system ATP-binding protein ZurA.
     
 0.557
ycdH
Adhesion protein.
     
 0.548
trxA8
Thioredoxin.
   
 
 0.546
Your Current Organism:
Haloarcula marismortui
NCBI taxonomy Id: 272569
Other names: H. marismortui ATCC 43049, Haloarcula marismortui ATCC 43049, Haloarcula marismortui str. ATCC 43049, Haloarcula marismortui strain ATCC 43049
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.