STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
livH-2Branched-chain amino acid ABC transporter permease protein. (329 aa)    
Predicted Functional Partners:
livM-2
Branched-chain amino acid ABC transporter permease protein.
 
 0.994
livM-3
Branched-chain amino acid ABC transporter permease protein.
  
 0.964
livF-2
Branched-chain amino acid ABC transporter ATP-binding protein.
 
  
 0.963
livM-6
Branched-chain amino acid ABC transporter permease protein.
  
 0.959
livG-2
Branched-chain amino acid ABC transporter ATP-binding protein.
  
 0.937
livM-4
Branched-chain amino acid ABC transporter permease protein.
  
 0.872
livM
High-affinity branched-chain amino acid transport protein.
  
 0.865
livM-5
Branched-chain amino acid ABC transporter permease protein.
  
 0.862
livG-9
Branched-chain amino acid ABC transporter ATP-binding protein.
  
 0.858
livM-7
High-affinity branched-chain amino acid transport protein.
 
  
 0.855
Your Current Organism:
Haloarcula marismortui
NCBI taxonomy Id: 272569
Other names: H. marismortui ATCC 43049, Haloarcula marismortui ATCC 43049, Haloarcula marismortui str. ATCC 43049, Haloarcula marismortui strain ATCC 43049
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