STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rrnAC1297Unknown. (449 aa)    
Predicted Functional Partners:
rpb4
RNA polymerase Rpb4; RNAP sub F.
  
     0.702
rpl30P
50S ribosomal protein L30P; This is one of 5 proteins that mediate the attachment of the 5S rRNA onto the large ribosomal subunit, stabilizing the orientation of adjacent RNA domains.
  
     0.584
eif4A
ATP-dependent RNA helicase homolog eIF-4A.
  
     0.569
rrnAC1128
Unknown.
  
     0.559
atpF
V-type ATP synthase subunit F; Produces ATP from ADP in the presence of a proton gradient across the membrane.
  
     0.552
rpl31E
50S ribosomal protein L31e; Binds to the 23S rRNA. Located at the polypeptide exit tunnel on the outside of the subunit; Belongs to the eukaryotic ribosomal protein eL31 family.
  
     0.550
moeA2
Molybdopterin biosynthesis protein moeA.
       0.549
nac-2
Unknown; Contacts the emerging nascent chain on the ribosome. Belongs to the NAC-alpha family.
 
     0.543
rps24E
30S ribosomal protein S24e; Belongs to the eukaryotic ribosomal protein eS24 family.
  
     0.533
recJ5
RecJ-like exonuclease; DHH/DHHA1 family protein.
  
     0.523
Your Current Organism:
Haloarcula marismortui
NCBI taxonomy Id: 272569
Other names: H. marismortui ATCC 43049, Haloarcula marismortui ATCC 43049, Haloarcula marismortui str. ATCC 43049, Haloarcula marismortui strain ATCC 43049
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.