STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fdoHFormate dehydrogenase-O iron-sulfur subunit. (220 aa)    
Predicted Functional Partners:
fdhF
Formate dehydrogenase alpha subunit.
 
 0.999
moz
Molybdopterin oxidoreductase.
 
 
 0.982
dmsA
Dimethylsulfoxide reductase.
 
 
 0.941
narB
Nitrate reductase.
 
 
 0.907
purU
Formyltetrahydrofolate deformylase.
    
  0.900
rrnAC1334
Unknown.
       0.871
mdh
L-malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily.
  
  
 0.850
pepC
Phosphoenolpyruvate carboxylase.
   
 
 0.837
rrnAC1335
Unknown.
 
     0.831
maeB
NAD-dependent malate dehydrogenase.
    
 0.809
Your Current Organism:
Haloarcula marismortui
NCBI taxonomy Id: 272569
Other names: H. marismortui ATCC 43049, Haloarcula marismortui ATCC 43049, Haloarcula marismortui str. ATCC 43049, Haloarcula marismortui strain ATCC 43049
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.