Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
fib | mutT4 | rrnAC0865 | rrnAC1863 | Fibrillarin-like pre-rRNA processing protein; Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA; Belongs to the methyltransferase superfamily. Fibrillarin family. | Mut/nudix family protein. | 0.679 |
fib | vacB | rrnAC0865 | rrnAC2072 | Fibrillarin-like pre-rRNA processing protein; Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA; Belongs to the methyltransferase superfamily. Fibrillarin family. | Ribonuclease R. | 0.727 |
htrA1 | mutT4 | rrnAC0296 | rrnAC1863 | Serine protease HtrA. | Mut/nudix family protein. | 0.421 |
htrA1 | soxB | rrnAC0296 | rrnAC1865 | Serine protease HtrA. | Sarcosine oxidase. | 0.575 |
mutT4 | fib | rrnAC1863 | rrnAC0865 | Mut/nudix family protein. | Fibrillarin-like pre-rRNA processing protein; Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA; Belongs to the methyltransferase superfamily. Fibrillarin family. | 0.679 |
mutT4 | htrA1 | rrnAC1863 | rrnAC0296 | Mut/nudix family protein. | Serine protease HtrA. | 0.421 |
mutT4 | rrnAC1859 | rrnAC1863 | rrnAC1859 | Mut/nudix family protein. | Unknown. | 0.538 |
mutT4 | rrnAC1860 | rrnAC1863 | rrnAC1860 | Mut/nudix family protein. | Sugar transporter. | 0.558 |
mutT4 | rrnAC1861 | rrnAC1863 | rrnAC1861 | Mut/nudix family protein. | Unknown. | 0.738 |
mutT4 | rrnAC1864 | rrnAC1863 | rrnAC1864 | Mut/nudix family protein. | Unknown. | 0.725 |
mutT4 | soxB | rrnAC1863 | rrnAC1865 | Mut/nudix family protein. | Sarcosine oxidase. | 0.668 |
mutT4 | vacB | rrnAC1863 | rrnAC2072 | Mut/nudix family protein. | Ribonuclease R. | 0.661 |
rrnAC1859 | mutT4 | rrnAC1859 | rrnAC1863 | Unknown. | Mut/nudix family protein. | 0.538 |
rrnAC1859 | rrnAC1860 | rrnAC1859 | rrnAC1860 | Unknown. | Sugar transporter. | 0.581 |
rrnAC1859 | rrnAC1861 | rrnAC1859 | rrnAC1861 | Unknown. | Unknown. | 0.682 |
rrnAC1860 | mutT4 | rrnAC1860 | rrnAC1863 | Sugar transporter. | Mut/nudix family protein. | 0.558 |
rrnAC1860 | rrnAC1859 | rrnAC1860 | rrnAC1859 | Sugar transporter. | Unknown. | 0.581 |
rrnAC1860 | rrnAC1861 | rrnAC1860 | rrnAC1861 | Sugar transporter. | Unknown. | 0.719 |
rrnAC1860 | soxB | rrnAC1860 | rrnAC1865 | Sugar transporter. | Sarcosine oxidase. | 0.527 |
rrnAC1861 | mutT4 | rrnAC1861 | rrnAC1863 | Unknown. | Mut/nudix family protein. | 0.738 |
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