STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mhpC2-hydroxy-6-ketonona-24-dienedioic acid hydrolase. (349 aa)    
Predicted Functional Partners:
yhcR4
Phosphoesterase.
 
 
  0.643
trzA2
N-ethylammeline chlorohydrolase.
 
   
 0.635
rad24
DNA repair protein.
 
 
  0.634
est
Carboxylesterase.
  
     0.617
rrnAC0931
Unknown.
  
     0.530
pca
3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase.
  
     0.520
sdr2
Oxidoreductase short-chain dehydrogenase/reductase family.
 
 
 0.482
rrnAC2273
Unknown.
 
 0.471
htrA1
Serine protease HtrA.
 
 
 0.462
dnaK
Chaperone protein DnaK; Acts as a chaperone.
 
 
 0.424
Your Current Organism:
Haloarcula marismortui
NCBI taxonomy Id: 272569
Other names: H. marismortui ATCC 43049, Haloarcula marismortui ATCC 43049, Haloarcula marismortui str. ATCC 43049, Haloarcula marismortui strain ATCC 43049
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.