STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cbiQ1Cobalt transport protein. (263 aa)    
Predicted Functional Partners:
cbiM
Cobalamin biosynthesis protein CbiM.
 0.999
rrnAC2281
Unknown.
  
 0.996
cbiO
Cobalt transport ATP-binding protein.
 
 
 0.984
bioY
Dethiobiotin synthesis protein.
 
 
 0.909
zurM
ABC transporter permease protein.
 
  
 0.832
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs; Belongs to the tRNA pseudouridine synthase TruA family.
 
  
 0.756
zurA
Zinc uptake system ATP-binding protein ZurA.
     
 0.730
ycdH
Adhesion protein.
     
 0.712
copG1
Transcriptional regulator CopG family; Transcriptional regulator; Belongs to the transcriptional regulatory CopG/NikR family.
 
   
 0.692
cbiG
Cobalamin biosynthesis protein G.
 
  
 0.674
Your Current Organism:
Haloarcula marismortui
NCBI taxonomy Id: 272569
Other names: H. marismortui ATCC 43049, Haloarcula marismortui ATCC 43049, Haloarcula marismortui str. ATCC 43049, Haloarcula marismortui strain ATCC 43049
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.