Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
adh2 | amy | rrnAC3506 | rrnAC2350 | Alcohol dehydrogenase. | Alpha amylase. | 0.657 |
adh2 | icd | rrnAC3506 | rrnAC3419 | Alcohol dehydrogenase. | Isocitrate dehydrogenase. | 0.709 |
amy | adh2 | rrnAC2350 | rrnAC3506 | Alpha amylase. | Alcohol dehydrogenase. | 0.657 |
amy | arsR | rrnAC2350 | rrnAC3447 | Alpha amylase. | Transcription regulator. | 0.664 |
amy | cat | rrnAC2350 | rrnAC0244 | Alpha amylase. | Cationic amino acid transporter. | 0.837 |
amy | cat-2 | rrnAC2350 | rrnAC0759 | Alpha amylase. | Cationic amino acid transporter. | 0.837 |
amy | flaB | rrnAC2350 | rrnAC2198 | Alpha amylase. | Flagellin B precursor; Flagellin is the subunit protein which polymerizes to form the filaments of archaeal flagella. | 0.726 |
amy | icd | rrnAC2350 | rrnAC3419 | Alpha amylase. | Isocitrate dehydrogenase. | 0.719 |
amy | malE1 | rrnAC2350 | rrnAC2349 | Alpha amylase. | Maltose ABC transporter maltose-binding protein. | 0.902 |
amy | malFG-6 | rrnAC2350 | rrnAC2347 | Alpha amylase. | ABC-type sugar transport systems permease components. | 0.824 |
amy | malG | rrnAC2350 | rrnAC2346 | Alpha amylase. | Maltose ABC transporter permease protein. | 0.785 |
amy | yhdG | rrnAC2350 | rrnAC1651 | Alpha amylase. | Amino acid transporter. | 0.837 |
arsR | amy | rrnAC3447 | rrnAC2350 | Transcription regulator. | Alpha amylase. | 0.664 |
cat | amy | rrnAC0244 | rrnAC2350 | Cationic amino acid transporter. | Alpha amylase. | 0.837 |
cat-2 | amy | rrnAC0759 | rrnAC2350 | Cationic amino acid transporter. | Alpha amylase. | 0.837 |
flaB | amy | rrnAC2198 | rrnAC2350 | Flagellin B precursor; Flagellin is the subunit protein which polymerizes to form the filaments of archaeal flagella. | Alpha amylase. | 0.726 |
icd | adh2 | rrnAC3419 | rrnAC3506 | Isocitrate dehydrogenase. | Alcohol dehydrogenase. | 0.709 |
icd | amy | rrnAC3419 | rrnAC2350 | Isocitrate dehydrogenase. | Alpha amylase. | 0.719 |
malE1 | amy | rrnAC2349 | rrnAC2350 | Maltose ABC transporter maltose-binding protein. | Alpha amylase. | 0.902 |
malE1 | malFG-6 | rrnAC2349 | rrnAC2347 | Maltose ABC transporter maltose-binding protein. | ABC-type sugar transport systems permease components. | 0.998 |
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