STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
potC2Spermidine/putrescine ABC transporter permease. (268 aa)    
Predicted Functional Partners:
potB2
Spermidine/putrescine ABC transporter permease protein.
 
 0.999
potD2
Spermidine/putrescine ABC transporter spermidine/putrescine binding protein.
 
 
 0.996
potA2
Spermidine/putrescine ABC transporter ATP-binding protein.
 
 
 0.989
rrnAC0957
Unknown.
  
  
 0.843
potA3
Spermidine/putrescine ABC transporter ATP-binding protein.
 
  
 0.751
potA4
Spermidine/putrescine ABC transporter ATP-binding protein.
 
  
 0.698
cbiO
Cobalt transport ATP-binding protein.
   
    0.636
phaJ1
(R)-specific enoyl -CoA hydratase.
  
    0.633
smc1
Structural maintenance of chromosomes; Part of the Rad50/Mre11 complex, which is involved in the early steps of DNA double-strand break (DSB) repair. Rad50 controls the balance between DNA end bridging and DNA resection via ATP-dependent structural rearrangements of the Rad50/Mre11 complex. Belongs to the SMC family. RAD50 subfamily.
 
   
 0.589
mch-2
Unknown; Involved in the methylaspartate cycle. Catalyzes the reversible hydration of mesaconyl-CoA (methylfumaryl-CoA) to yield beta-methylmalyl-CoA ((2R,3S)-beta-methylmalyl-CoA). Belongs to the enoyl-CoA hydratase/isomerase family.
  
    0.582
Your Current Organism:
Haloarcula marismortui
NCBI taxonomy Id: 272569
Other names: H. marismortui ATCC 43049, Haloarcula marismortui ATCC 43049, Haloarcula marismortui str. ATCC 43049, Haloarcula marismortui strain ATCC 43049
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.