Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| endA | rpaA | rrnAC2964 | rrnAC1133 | tRNA intron endonuclease; Endonuclease that removes tRNA introns. Cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3' cyclic phosphate and 5'-OH termini. Recognizes a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp (By similarity). | Replication protein A. | 0.568 |
| endA | rrnAC0293 | rrnAC2964 | rrnAC0293 | tRNA intron endonuclease; Endonuclease that removes tRNA introns. Cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3' cyclic phosphate and 5'-OH termini. Recognizes a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp (By similarity). | Unknown. | 0.532 |
| endA | rrnAC2962 | rrnAC2964 | rrnAC2962 | tRNA intron endonuclease; Endonuclease that removes tRNA introns. Cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3' cyclic phosphate and 5'-OH termini. Recognizes a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp (By similarity). | Putative haloacid dehalogenase-like hydrolase. | 0.474 |
| endA | top1 | rrnAC2964 | rrnAC2963 | tRNA intron endonuclease; Endonuclease that removes tRNA introns. Cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3' cyclic phosphate and 5'-OH termini. Recognizes a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp (By similarity). | Topoisomerase DNA binding C4 zinc finger. | 0.798 |
| endA | trpS | rrnAC2964 | rrnAC2965 | tRNA intron endonuclease; Endonuclease that removes tRNA introns. Cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3' cyclic phosphate and 5'-OH termini. Recognizes a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp (By similarity). | tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). | 0.767 |
| prxS | rpaA | rrnAC2601 | rrnAC1133 | AhpC/TSA family peroxiredoxins PrxS. | Replication protein A. | 0.438 |
| prxS | rrnAC0293 | rrnAC2601 | rrnAC0293 | AhpC/TSA family peroxiredoxins PrxS. | Unknown. | 0.564 |
| prxS | rrnAC0639 | rrnAC2601 | rrnAC0639 | AhpC/TSA family peroxiredoxins PrxS. | Acetyltransferase family; GNAT. | 0.646 |
| prxS | rrnAC2136 | rrnAC2601 | rrnAC2136 | AhpC/TSA family peroxiredoxins PrxS. | Unknown. | 0.460 |
| prxS | rrnAC3486 | rrnAC2601 | rrnAC3486 | AhpC/TSA family peroxiredoxins PrxS. | Unknown. | 0.441 |
| prxS | top1 | rrnAC2601 | rrnAC2963 | AhpC/TSA family peroxiredoxins PrxS. | Topoisomerase DNA binding C4 zinc finger. | 0.684 |
| rpaA | endA | rrnAC1133 | rrnAC2964 | Replication protein A. | tRNA intron endonuclease; Endonuclease that removes tRNA introns. Cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3' cyclic phosphate and 5'-OH termini. Recognizes a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp (By similarity). | 0.568 |
| rpaA | prxS | rrnAC1133 | rrnAC2601 | Replication protein A. | AhpC/TSA family peroxiredoxins PrxS. | 0.438 |
| rpaA | rrnAC0293 | rrnAC1133 | rrnAC0293 | Replication protein A. | Unknown. | 0.632 |
| rpaA | rrnAC0639 | rrnAC1133 | rrnAC0639 | Replication protein A. | Acetyltransferase family; GNAT. | 0.402 |
| rpaA | rrnAC1664 | rrnAC1133 | rrnAC1664 | Replication protein A. | Unknown. | 0.432 |
| rpaA | rrnAC2136 | rrnAC1133 | rrnAC2136 | Replication protein A. | Unknown. | 0.449 |
| rpaA | rrnAC3486 | rrnAC1133 | rrnAC3486 | Replication protein A. | Unknown. | 0.447 |
| rpaA | top1 | rrnAC1133 | rrnAC2963 | Replication protein A. | Topoisomerase DNA binding C4 zinc finger. | 0.594 |
| rrnAC0293 | endA | rrnAC0293 | rrnAC2964 | Unknown. | tRNA intron endonuclease; Endonuclease that removes tRNA introns. Cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3' cyclic phosphate and 5'-OH termini. Recognizes a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp (By similarity). | 0.532 |
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