STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
codACytidine/deoxycytidylate deaminase family protein. (154 aa)    
Predicted Functional Partners:
guaB4
Inosine-5'-monophosphate dehydrogenase related protein IV.
       0.695
rrnAC0187
Putative transporter.
 
   
 0.602
yjlD3
NADH dehydrogenase.
       0.507
icfA2
Carbonic anhydrase.
 
  
 0.496
rrnAC1158
Protein phosphatase 2C like phosphatase.
       0.457
rrnAC3248
Unknown.
       0.443
glnA
Glutamine synthetase.
 
   
 0.423
amt
Ammonium transporter.
     
 0.407
Your Current Organism:
Haloarcula marismortui
NCBI taxonomy Id: 272569
Other names: H. marismortui ATCC 43049, Haloarcula marismortui ATCC 43049, Haloarcula marismortui str. ATCC 43049, Haloarcula marismortui strain ATCC 43049
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.