STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oppD2Oligopeptide ABC transporter ATPase component. (406 aa)    
Predicted Functional Partners:
oppC2
Oligopeptide transport system permease protein OppC.
  
 0.992
oppC
Oligopeptide ABC transporter permease protein.
  
 0.989
dppB
Dipeptide ABC transporter permease.
 
 0.988
oppC1
Oligopeptide transport system permease protein OppC.
  
 0.987
dppB1
Dipeptide ABC transporter permease.
 
 0.946
oppB
Oligopeptide ABC transporter permease protein.
 
 0.933
ykfD
Oligopeptide ABC transporter ATP-binding.
 
   
0.918
dppA
Dipeptide ABC transporter dipeptide-binding.
 
  
 0.914
rrnAC3294
Unknown.
     
 0.849
potA2
Spermidine/putrescine ABC transporter ATP-binding protein.
 
     
0.829
Your Current Organism:
Haloarcula marismortui
NCBI taxonomy Id: 272569
Other names: H. marismortui ATCC 43049, Haloarcula marismortui ATCC 43049, Haloarcula marismortui str. ATCC 43049, Haloarcula marismortui strain ATCC 43049
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.