STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
htlA-2Unknown. (368 aa)    
Predicted Functional Partners:
rrnAC3368
Unknown.
  
    0.611
rrnAC2115
Unknown.
  
     0.601
rrnAC1335
Unknown.
  
     0.586
blh
Brp-like protein-like; Catalyzes the cleavage of beta-carotene at its central double bond (15,15') to yield two molecules of all-trans-retinal. Belongs to the Brp/Blh beta-carotene diooxygenase family.
  
    0.573
rrnAC2453
Unknown.
 
   
 0.573
boa-9
Bacterio-opsin activator-like protein.
  
     0.572
rrnAC2817
Unknown.
  
     0.555
hcp5
Halocyanin precursor-like.
 
     0.544
rrnAC2982
Unknown.
 
    0.534
rrnAC3242
Unknown.
  
     0.517
Your Current Organism:
Haloarcula marismortui
NCBI taxonomy Id: 272569
Other names: H. marismortui ATCC 43049, Haloarcula marismortui ATCC 43049, Haloarcula marismortui str. ATCC 43049, Haloarcula marismortui strain ATCC 43049
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