Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KPN_00488 | KPN_01665 | KPN_00488 | KPN_01665 | Hypothetical protein; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily. | Hypothetical protein. | 0.970 |
KPN_00488 | KPN_01666 | KPN_00488 | KPN_01666 | Hypothetical protein; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily. | Transthyretin-like protein; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily. | 0.715 |
KPN_00488 | hpxO | KPN_00488 | KPN_01663 | Hypothetical protein; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily. | Putative flavoprotein monooxygenase; Catalyzes the hydroxylation of urate to 5-hydroxyisourate (HIU); Belongs to the FAD-dependent urate hydroxylase family. | 0.673 |
KPN_01616 | hpxO | KPN_01616 | KPN_01663 | High-affinity branched-chain amino acid transport protein (ABC superfamily, peri_bind). | Putative flavoprotein monooxygenase; Catalyzes the hydroxylation of urate to 5-hydroxyisourate (HIU); Belongs to the FAD-dependent urate hydroxylase family. | 0.665 |
KPN_01661 | KPN_01870 | KPN_01661 | KPN_01870 | Putative oxidoreductase. | NADH oxidoreductase for HCP. | 0.644 |
KPN_01661 | KPN_01872 | KPN_01661 | KPN_01872 | Putative oxidoreductase. | 3-phenylpropionate dioxygenase, alpha subunit. | 0.830 |
KPN_01661 | KPN_03371 | KPN_01661 | KPN_03371 | Putative oxidoreductase. | Putative ferredoxin. | 0.748 |
KPN_01661 | acs | KPN_01661 | KPN_04478 | Putative oxidoreductase. | Acetyl-coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. Acs undergoes a two-step reaction. In the first half reaction, Acs combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA. | 0.757 |
KPN_01661 | hpxO | KPN_01661 | KPN_01663 | Putative oxidoreductase. | Putative flavoprotein monooxygenase; Catalyzes the hydroxylation of urate to 5-hydroxyisourate (HIU); Belongs to the FAD-dependent urate hydroxylase family. | 0.618 |
KPN_01661 | nirD | KPN_01661 | KPN_03753 | Putative oxidoreductase. | Nitrite reductase small subunit. | 0.748 |
KPN_01665 | KPN_00488 | KPN_01665 | KPN_00488 | Hypothetical protein. | Hypothetical protein; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily. | 0.970 |
KPN_01665 | KPN_01666 | KPN_01665 | KPN_01666 | Hypothetical protein. | Transthyretin-like protein; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily. | 0.993 |
KPN_01665 | hpxO | KPN_01665 | KPN_01663 | Hypothetical protein. | Putative flavoprotein monooxygenase; Catalyzes the hydroxylation of urate to 5-hydroxyisourate (HIU); Belongs to the FAD-dependent urate hydroxylase family. | 0.733 |
KPN_01666 | KPN_00488 | KPN_01666 | KPN_00488 | Transthyretin-like protein; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily. | Hypothetical protein; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily. | 0.715 |
KPN_01666 | KPN_01665 | KPN_01666 | KPN_01665 | Transthyretin-like protein; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily. | Hypothetical protein. | 0.993 |
KPN_01666 | hpxO | KPN_01666 | KPN_01663 | Transthyretin-like protein; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily. | Putative flavoprotein monooxygenase; Catalyzes the hydroxylation of urate to 5-hydroxyisourate (HIU); Belongs to the FAD-dependent urate hydroxylase family. | 0.782 |
KPN_01870 | KPN_01661 | KPN_01870 | KPN_01661 | NADH oxidoreductase for HCP. | Putative oxidoreductase. | 0.644 |
KPN_01870 | KPN_01872 | KPN_01870 | KPN_01872 | NADH oxidoreductase for HCP. | 3-phenylpropionate dioxygenase, alpha subunit. | 0.988 |
KPN_01870 | KPN_03371 | KPN_01870 | KPN_03371 | NADH oxidoreductase for HCP. | Putative ferredoxin. | 0.759 |
KPN_01870 | acs | KPN_01870 | KPN_04478 | NADH oxidoreductase for HCP. | Acetyl-coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. Acs undergoes a two-step reaction. In the first half reaction, Acs combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA. | 0.757 |
page 1 of 3