Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KPN_02968 | KPN_04031 | KPN_02968 | KPN_04031 | Putative helix-turn-helix, AraC type. | Putative ARAC-type regulatory protein. | 0.702 |
KPN_02968 | gltB | KPN_02968 | KPN_03624 | Putative helix-turn-helix, AraC type. | Glutamate synthase, large subunit. | 0.710 |
KPN_02968 | maeB | KPN_02968 | KPN_02797 | Putative helix-turn-helix, AraC type. | Phosphate acetyltransferase. | 0.514 |
KPN_02968 | rhaR | KPN_02968 | KPN_04215 | Putative helix-turn-helix, AraC type. | Positive regulator for rhaRS operon; Activates expression of the rhaSR operon in response to L- rhamnose. | 0.778 |
KPN_02968 | rhaS | KPN_02968 | KPN_04214 | Putative helix-turn-helix, AraC type. | Positive regulator for rhaBAD operon; Activates expression of the rhaBAD and rhaT operons. | 0.755 |
KPN_02968 | ydbK | KPN_02968 | KPN_01446 | Putative helix-turn-helix, AraC type. | Putative oxidoreductase, Fe-S subunit. | 0.714 |
KPN_04031 | KPN_02968 | KPN_04031 | KPN_02968 | Putative ARAC-type regulatory protein. | Putative helix-turn-helix, AraC type. | 0.702 |
KPN_04031 | KPN_04449 | KPN_04031 | KPN_04449 | Putative ARAC-type regulatory protein. | Regulation of superoxide response regulon. | 0.720 |
KPN_04031 | gltB | KPN_04031 | KPN_03624 | Putative ARAC-type regulatory protein. | Glutamate synthase, large subunit. | 0.756 |
KPN_04031 | maeB | KPN_04031 | KPN_02797 | Putative ARAC-type regulatory protein. | Phosphate acetyltransferase. | 0.732 |
KPN_04031 | marA | KPN_04031 | KPN_01624 | Putative ARAC-type regulatory protein. | Multiple antibiotic resistance; transcriptional activator of defense systems. | 0.673 |
KPN_04031 | pheA | KPN_04031 | KPN_02920 | Putative ARAC-type regulatory protein. | Bifunctional chorismate mutase P/prephenate dehydratase. | 0.775 |
KPN_04031 | rhaR | KPN_04031 | KPN_04215 | Putative ARAC-type regulatory protein. | Positive regulator for rhaRS operon; Activates expression of the rhaSR operon in response to L- rhamnose. | 0.722 |
KPN_04031 | rhaS | KPN_04031 | KPN_04214 | Putative ARAC-type regulatory protein. | Positive regulator for rhaBAD operon; Activates expression of the rhaBAD and rhaT operons. | 0.604 |
KPN_04031 | ydbK | KPN_04031 | KPN_01446 | Putative ARAC-type regulatory protein. | Putative oxidoreductase, Fe-S subunit. | 0.793 |
KPN_04449 | KPN_04031 | KPN_04449 | KPN_04031 | Regulation of superoxide response regulon. | Putative ARAC-type regulatory protein. | 0.720 |
KPN_04449 | gltB | KPN_04449 | KPN_03624 | Regulation of superoxide response regulon. | Glutamate synthase, large subunit. | 0.710 |
KPN_04449 | maeB | KPN_04449 | KPN_02797 | Regulation of superoxide response regulon. | Phosphate acetyltransferase. | 0.514 |
KPN_04449 | rhaR | KPN_04449 | KPN_04215 | Regulation of superoxide response regulon. | Positive regulator for rhaRS operon; Activates expression of the rhaSR operon in response to L- rhamnose. | 0.768 |
KPN_04449 | rhaS | KPN_04449 | KPN_04214 | Regulation of superoxide response regulon. | Positive regulator for rhaBAD operon; Activates expression of the rhaBAD and rhaT operons. | 0.771 |
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