STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oppCPermease protein (oligopeptide ABC transporter); OppC. (343 aa)    
Predicted Functional Partners:
oppB
Permease protein; Oligopeptide ABC transporter.
 
 0.999
oppD
ATP binding protein; Oligopept. ABC transporter; Belongs to the ABC transporter superfamily.
 
 0.999
oppF
ATP binding protein (oligopeptide ABC transporter); OppF; Belongs to the ABC transporter superfamily.
 
 0.999
oppD-2
Oligopeptide ABC transporter ATP-binding protein; OppD; Belongs to the ABC transporter superfamily.
  
 0.998
oppF-2
Oligopeptide ABC transporter (ATP-binding protein); OppF; Belongs to the ABC transporter superfamily.
  
 0.997
oppB-2
Oligopeptide transport protein; OppB.
  
 0.990
oppA
Oligopeptide binding protein; ABC transporter; OppA.
 
 0.988
oppA-2
Peptide binding protein; ABC transporter; OppA.
 
 0.988
oppA-8
Oligopeptide ABC transporter substrate binding protein; OppA.
 
 0.983
LBA1216
Pheromone-peptide binding protein.
 
 0.981
Your Current Organism:
Lactobacillus acidophilus
NCBI taxonomy Id: 272621
Other names: L. acidophilus NCFM, Lactobacillus acidophilus NCFM, Lactobacillus acidophilus str. NCFM, Lactobacillus acidophilus strain NCFM
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.