STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LBA1001Putative trp repressor binding protein. (150 aa)    
Predicted Functional Partners:
LBA1226
Hypothetical Cytosolic protein.
 
     0.670
LBA1563
COG0716 Flavodoxins.
 
     0.663
LBA0497
Hypothetical protein.
 
     0.638
LBA1002
Excinuclease subunit A.
       0.597
LBA0543
Hypothetical protein.
  
  
 0.596
recQ
ATP-dependent DNA helicase; RecQ.
       0.574
lysR-3
Putative transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
     0.571
LBA0493
Aggregation promoting factor.
  
  
 0.510
lysM
Putative aggregation promoting protein; LysM; extracellular protein.
  
  
 0.510
MmuM
Homocysteine S-methyltransferase.
       0.490
Your Current Organism:
Lactobacillus acidophilus
NCBI taxonomy Id: 272621
Other names: L. acidophilus NCFM, Lactobacillus acidophilus NCFM, Lactobacillus acidophilus str. NCFM, Lactobacillus acidophilus strain NCFM
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.