STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LBA1351Lysin; Potential frameshift to 1352. (249 aa)    
Predicted Functional Partners:
LBA1352
Lysin; Potential frameshift to 1351; COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase).
   
 0.986
LBA1744
Putative glycosidase; COG3942 Surface antigen.
  
  
 0.849
LBA0616
Hypothetical protein; COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase).
     
 0.833
LBA1639
COG2367 Beta-lactamase class A.
  
     0.690
LBA1194
Putative enterolysin A; Potential frameshift to 1195.
  
   
 0.674
LBA1184
Hypothetical protein.
  
     0.670
dnaB-2
Chromosome replication initiation; DnaB.
  
     0.661
LBA1186
Hypothetical protein.
  
     0.646
xerD-2
Putative integrase-recombinase; XerD; hypothetical protein; Belongs to the 'phage' integrase family.
  
     0.636
tetR
COG1309 transcriptional regulator, TetR family.
  
     0.596
Your Current Organism:
Lactobacillus acidophilus
NCBI taxonomy Id: 272621
Other names: L. acidophilus NCFM, Lactobacillus acidophilus NCFM, Lactobacillus acidophilus str. NCFM, Lactobacillus acidophilus strain NCFM
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.