STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yrgGUncharacterized protein; EVIDENCE BY HOMOLOGY BIO15.01 HYPOTHETICAL. General. there are two paralogs in L.lactis, also yrgE (123 aa)    
Predicted Functional Partners:
ptnAB
Mannose-specific PTS system component IIAB; EVIDENCE BY HOMOLOGY BIO13.07 TRANSPORT AND BINDING proteinS. PTS system
 
   
 0.919
ptnD
Mannose-specific PTS system component IID; EVIDENCE BY HOMOLOGY BIO13.07 TRANSPORT AND BINDING proteinS. PTS system
 
   
 0.758
ptnC
Mannose-specific PTS system component IIC; EVIDENCE BY HOMOLOGY BIO13.07 TRANSPORT AND BINDING proteinS. PTS system
 
   
 0.753
yrgF
Uncharacterized protein; EVIDENCE BY HOMOLOGY BIO15.01 HYPOTHETICAL. General. there are five paralogs in L.lactis. 27% identical to YqfU of B.subtilis
       0.569
serS
Serine--tRNA ligase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
       0.403
Your Current Organism:
Lactococcus lactis Il1403
NCBI taxonomy Id: 272623
Other names: L. lactis subsp. lactis Il1403, Lactococcus lactis Il1403, Lactococcus lactis subsp. lactis Il1403, Lactococcus lactis subsp. lactis str. Il1403, Lactococcus lactis subsp. lactis strain Il1403
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