Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
bcp | lpg0521 | lpg2212 | lpg0521 | Acetylpolyamine aminohydolase. | Hypothetical protein. | 0.773 |
bcp | rplF | lpg2212 | lpg0344 | Acetylpolyamine aminohydolase. | 50S ribosomal protein L6/(L9E); This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.734 |
bcp | serA | lpg2212 | lpg0242 | Acetylpolyamine aminohydolase. | D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 0.731 |
bcp | udk | lpg2212 | lpg1165 | Acetylpolyamine aminohydolase. | Uridine kinase. | 0.773 |
bcp | udk-2 | lpg2212 | lpg1853 | Acetylpolyamine aminohydolase. | Uridine kinase. | 0.773 |
lpg0521 | bcp | lpg0521 | lpg2212 | Hypothetical protein. | Acetylpolyamine aminohydolase. | 0.773 |
lpg0521 | serA | lpg0521 | lpg0242 | Hypothetical protein. | D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 0.802 |
lpg0521 | udk | lpg0521 | lpg1165 | Hypothetical protein. | Uridine kinase. | 0.513 |
lpg0521 | udk-2 | lpg0521 | lpg1853 | Hypothetical protein. | Uridine kinase. | 0.610 |
lpg0947 | lpg1634 | lpg0947 | lpg1634 | 2-oxoglutarate ferredoxin oxidoreductase alpha subunit. | Oxidase. | 0.826 |
lpg0947 | lpg2581 | lpg0947 | lpg2581 | 2-oxoglutarate ferredoxin oxidoreductase alpha subunit. | 2-oxoisovalerate dehydrogenase, E1 component, alpha and beta fusion. | 0.792 |
lpg0947 | serA | lpg0947 | lpg0242 | 2-oxoglutarate ferredoxin oxidoreductase alpha subunit. | D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 0.709 |
lpg1634 | lpg0947 | lpg1634 | lpg0947 | Oxidase. | 2-oxoglutarate ferredoxin oxidoreductase alpha subunit. | 0.826 |
lpg1634 | lpg2581 | lpg1634 | lpg2581 | Oxidase. | 2-oxoisovalerate dehydrogenase, E1 component, alpha and beta fusion. | 0.802 |
lpg1634 | serA | lpg1634 | lpg0242 | Oxidase. | D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 0.730 |
lpg2581 | lpg0947 | lpg2581 | lpg0947 | 2-oxoisovalerate dehydrogenase, E1 component, alpha and beta fusion. | 2-oxoglutarate ferredoxin oxidoreductase alpha subunit. | 0.792 |
lpg2581 | lpg1634 | lpg2581 | lpg1634 | 2-oxoisovalerate dehydrogenase, E1 component, alpha and beta fusion. | Oxidase. | 0.802 |
lpg2581 | serA | lpg2581 | lpg0242 | 2-oxoisovalerate dehydrogenase, E1 component, alpha and beta fusion. | D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 0.707 |
neuA | serA | lpg0751 | lpg0242 | CMP-N-acetylneuraminic acid synthetase; Involved in biosynthesis of legionaminic acid (5,7-diamino- 3,5,7,9-tetradeoxy-D-glycero-D-galacto-non-2-ulosonic acid)(Leg), a sialic acid-like derivative that is incorporated into virulence- associated cell surface glycoconjugates such as lipopolysaccharide (LPS) which could be a key determinant in the ability of L.pneumophila to inhibit the fusion of phagosomes with lysosomes. LPS contains a majority alpha2,4-linked homopolymer of legionaminic acid. Catalyzes the conversion of N,N'-diacetyllegionaminic acid (Leg5Ac7Ac) and CTP into CMP-N,N'-di [...] | D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 0.720 |
rplF | bcp | lpg0344 | lpg2212 | 50S ribosomal protein L6/(L9E); This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | Acetylpolyamine aminohydolase. | 0.734 |
page 1 of 2