Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
lpg2084 | lpg2086 | lpg2084 | lpg2086 | Putative conjugative transfer protein TrbC. | TraW. | 0.946 |
lpg2084 | traF | lpg2084 | lpg2081 | Putative conjugative transfer protein TrbC. | Sex pilus assembly TraF, thiol-disulfide isomerase and thioredoxins. | 0.949 |
lpg2084 | traF-2 | lpg2084 | lpg2082 | Putative conjugative transfer protein TrbC. | Pilus assembly protein TraF. | 0.952 |
lpg2084 | traG | lpg2084 | lpg2079 | Putative conjugative transfer protein TrbC. | TraG. | 0.954 |
lpg2084 | traH | lpg2084 | lpg2080 | Putative conjugative transfer protein TrbC. | TraH. | 0.956 |
lpg2084 | traN | lpg2084 | lpg2083 | Putative conjugative transfer protein TrbC. | TraN. | 0.952 |
lpg2084 | traU | lpg2084 | lpg2085 | Putative conjugative transfer protein TrbC. | TraU. | 0.948 |
lpg2086 | lpg2084 | lpg2086 | lpg2084 | TraW. | Putative conjugative transfer protein TrbC. | 0.946 |
lpg2086 | traF | lpg2086 | lpg2081 | TraW. | Sex pilus assembly TraF, thiol-disulfide isomerase and thioredoxins. | 0.942 |
lpg2086 | traF-2 | lpg2086 | lpg2082 | TraW. | Pilus assembly protein TraF. | 0.944 |
lpg2086 | traG | lpg2086 | lpg2079 | TraW. | TraG. | 0.945 |
lpg2086 | traH | lpg2086 | lpg2080 | TraW. | TraH. | 0.945 |
lpg2086 | traN | lpg2086 | lpg2083 | TraW. | TraN. | 0.945 |
lpg2086 | traU | lpg2086 | lpg2085 | TraW. | TraU. | 0.952 |
lpg2897 | traF | lpg2897 | lpg2081 | Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). | Sex pilus assembly TraF, thiol-disulfide isomerase and thioredoxins. | 0.935 |
lpg2897 | traF-2 | lpg2897 | lpg2082 | Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). | Pilus assembly protein TraF. | 0.935 |
msrA | traF | lpg2908 | lpg2081 | Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | Sex pilus assembly TraF, thiol-disulfide isomerase and thioredoxins. | 0.989 |
msrA | traF-2 | lpg2908 | lpg2082 | Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | Pilus assembly protein TraF. | 0.989 |
nrdA | traF | lpg1774 | lpg2081 | Ribonucleoside-diphosphate reductase, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. | Sex pilus assembly TraF, thiol-disulfide isomerase and thioredoxins. | 0.916 |
nrdA | traF-2 | lpg1774 | lpg2082 | Ribonucleoside-diphosphate reductase, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. | Pilus assembly protein TraF. | 0.916 |
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