STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lin0792Blue-light photoreceptor; Exhibits the same spectroscopical features and blue-light induced photochemistry as plants phototropins, with the reversible formation of a blue-shifted photoproduct, assigned to an FMN-cysteine thiol adduct. Positive regulator in the activation of the general stress transcription factor sigma-B (By similarity). (253 aa)    
Predicted Functional Partners:
lin0697
Lin0697 protein; Similar to CheA activity-modulating chemotaxis protein CheV.
  
 
 0.972
rsbT
RsbT protein; Highly similar to positive regulation of sigma-B activity.
 
 
 0.949
rsbX
Indirect negative regulation of sigma B dependant gene expression (serine phosphatase).
 
 
 0.943
lin0691
Chemotaxis protein methyltransferase; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP.
  
 0.933
rsbU
RsbU protein; Highly similar to serine phosphatase RsbU.
 
 
 0.895
lin0178
Lin0178 protein.
 
 0.889
rsbW
sigma-B activity negative regulator RsbW; Negative regulator of sigma-B activity. Phosphorylates and inactivates its specific antagonist protein, RsbV. Upon phosphorylation of RsbV, RsbW is released and binds to sigma-B, thereby blocking its ability to form an RNA polymerase holoenzyme (E-sigma-B).
 
 
 0.872
lin0708
Lin0708 protein; Similar to flagellar motor switch protein fliY.
  
 
 0.824
rsbS
RsbS protein; Highly similar to negative regulation of sigma-B activity.
 
   
 0.771
lin1543
Lin1543 protein; Similar to two-component sensor histidine kinase.
 
 
 0.729
Your Current Organism:
Listeria innocua
NCBI taxonomy Id: 272626
Other names: L. innocua Clip11262, Listeria innocua Clip11262, Listeria innocua str. Clip11262, Listeria innocua strain Clip11262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.