Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| cspB | fri | gene:17566482 | gene:17565272 | Similar to major cold-shock protein. | Non-heme iron-binding ferritin; Protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction. Does not bind DNA; Belongs to the Dps family. | 0.600 |
| cspD | fri | gene:17566350 | gene:17565272 | CspD protein; Similar to cold shock protein. | Non-heme iron-binding ferritin; Protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction. Does not bind DNA; Belongs to the Dps family. | 0.602 |
| fri | cspB | gene:17565272 | gene:17566482 | Non-heme iron-binding ferritin; Protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction. Does not bind DNA; Belongs to the Dps family. | Similar to major cold-shock protein. | 0.600 |
| fri | cspD | gene:17565272 | gene:17566350 | Non-heme iron-binding ferritin; Protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction. Does not bind DNA; Belongs to the Dps family. | CspD protein; Similar to cold shock protein. | 0.602 |
| fri | lin0697 | gene:17565272 | gene:17565024 | Non-heme iron-binding ferritin; Protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction. Does not bind DNA; Belongs to the Dps family. | Lin0697 protein; Similar to CheA activity-modulating chemotaxis protein CheV. | 0.567 |
| fri | lin0937 | gene:17565272 | gene:17565267 | Non-heme iron-binding ferritin; Protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction. Does not bind DNA; Belongs to the Dps family. | Similar to protein-tyrosine-phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | 0.576 |
| fri | lin1620 | gene:17565272 | gene:17565951 | Non-heme iron-binding ferritin; Protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction. Does not bind DNA; Belongs to the Dps family. | Lin1620 protein; Similar to putative iron-sulfur flavoprotein. | 0.627 |
| fri | lin1645 | gene:17565272 | gene:17565976 | Non-heme iron-binding ferritin; Protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction. Does not bind DNA; Belongs to the Dps family. | Lin1645 protein; Similar to 2-cys peroxiredoxin. | 0.696 |
| fri | lin2302 | gene:17565272 | gene:17566664 | Non-heme iron-binding ferritin; Protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction. Does not bind DNA; Belongs to the Dps family. | Lin2302 protein. | 0.599 |
| fri | lin2655 | gene:17565272 | gene:17567035 | Non-heme iron-binding ferritin; Protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction. Does not bind DNA; Belongs to the Dps family. | Ribosome hibernation promoting factor; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. | 0.584 |
| fri | nifJ | gene:17565272 | gene:17565151 | Non-heme iron-binding ferritin; Protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction. Does not bind DNA; Belongs to the Dps family. | NifJ protein; Highly similar to pyruvate-flavodoxin oxidoreductase. | 0.599 |
| fri | sod | gene:17565272 | gene:17565809 | Non-heme iron-binding ferritin; Protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction. Does not bind DNA; Belongs to the Dps family. | Superoxide dismutase; Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems; Belongs to the iron/manganese superoxide dismutase family. | 0.569 |
| lin0697 | fri | gene:17565024 | gene:17565272 | Lin0697 protein; Similar to CheA activity-modulating chemotaxis protein CheV. | Non-heme iron-binding ferritin; Protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction. Does not bind DNA; Belongs to the Dps family. | 0.567 |
| lin0697 | lin1645 | gene:17565024 | gene:17565976 | Lin0697 protein; Similar to CheA activity-modulating chemotaxis protein CheV. | Lin1645 protein; Similar to 2-cys peroxiredoxin. | 0.469 |
| lin0697 | sod | gene:17565024 | gene:17565809 | Lin0697 protein; Similar to CheA activity-modulating chemotaxis protein CheV. | Superoxide dismutase; Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems; Belongs to the iron/manganese superoxide dismutase family. | 0.418 |
| lin0937 | fri | gene:17565267 | gene:17565272 | Similar to protein-tyrosine-phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | Non-heme iron-binding ferritin; Protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction. Does not bind DNA; Belongs to the Dps family. | 0.576 |
| lin0937 | lin2302 | gene:17565267 | gene:17566664 | Similar to protein-tyrosine-phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | Lin2302 protein. | 0.413 |
| lin1620 | fri | gene:17565951 | gene:17565272 | Lin1620 protein; Similar to putative iron-sulfur flavoprotein. | Non-heme iron-binding ferritin; Protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction. Does not bind DNA; Belongs to the Dps family. | 0.627 |
| lin1620 | lin2302 | gene:17565951 | gene:17566664 | Lin1620 protein; Similar to putative iron-sulfur flavoprotein. | Lin2302 protein. | 0.433 |
| lin1620 | nifJ | gene:17565951 | gene:17565151 | Lin1620 protein; Similar to putative iron-sulfur flavoprotein. | NifJ protein; Highly similar to pyruvate-flavodoxin oxidoreductase. | 0.594 |
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