STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lin1836Lin1836 protein; Similar to transcriptional regulator (GntR family). (122 aa)    
Predicted Functional Partners:
lin1835
Lin1835 protein; Similar to ABC transporter, ATP-binding protein.
 
  
 0.947
lin1834
Lin1834 protein.
       0.784
lin1833
Lin1833 protein; Similar to ATP-dependent RNA helicases.
       0.652
lin1837
Lin1837 protein; Similar to hypothetical proteins.
       0.504
lin2912
Lin2912 protein; Similar to ABC transporter, ATP-binding protein.
 
  
 0.491
lin0672
Lin0672 protein; Similar to ABC transporter (ATP-binding protein).
  
  
 0.473
lin0924
Lin0924 protein; Similar to ABC transporter, ATP-binding protein.
  
  
 0.473
lin0978
Lin0978 protein; Similar to daunorubicin resistance ATP-binding proteins.
  
  
 0.473
lin0985
Lin0985 protein; Similar to antibiotic ABC transporter, ATP-binding protein.
  
  
 0.473
lin2078
Lin2078 protein; Similar to ABC transporter, ATP-binding protein.
  
  
 0.473
Your Current Organism:
Listeria innocua
NCBI taxonomy Id: 272626
Other names: L. innocua Clip11262, Listeria innocua Clip11262, Listeria innocua str. Clip11262, Listeria innocua strain Clip11262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.