lin2004 protein (Listeria innocua) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

lin2004

Lin2004 protein; Similar to conserved hypothetical proteins. (121 aa)

Predicted Functional Partners:

lin2003

0.828

lin2046

0.760

lin2707

0.759

lin1305

0.757

lin1479

0.755

lin1057

0.747

lin2792

0.703

lin1341

0.701

lin0997

0.684

lin0119

0.682

Your Current Organism:

Listeria innocua

NCBI taxonomy Id: 272626
Other names: L. innocua Clip11262, Listeria innocua Clip11262, Listeria innocua str. Clip11262, Listeria innocua strain Clip11262

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
lin0119	lin0997	gene:17564431	gene:17565327	Putative tape-measure [Bacteriophage A118].	Lin0997 protein.	0.754
lin0119	lin1305	gene:17564431	gene:17565636	Putative tape-measure [Bacteriophage A118].	Lin1305 protein.	0.756
lin0119	lin1341	gene:17564431	gene:17565672	Putative tape-measure [Bacteriophage A118].	Cell division suppressor protein YneA; Inhibits cell division during the SOS response. Affects a later stage of the cell division protein assembly, after the assembly of the Z ring, by probably suppressing recruitment of FtsL and/or DivIC to the division machinery; Belongs to the YneA family.	0.532
lin0119	lin1479	gene:17564431	gene:17565810	Putative tape-measure [Bacteriophage A118].	Similar to unknown proteins.	0.494
lin0119	lin2004	gene:17564431	gene:17566362	Putative tape-measure [Bacteriophage A118].	Lin2004 protein; Similar to conserved hypothetical proteins.	0.682
lin0119	lin2046	gene:17564431	gene:17566404	Putative tape-measure [Bacteriophage A118].	Lin2046 protein; Similar to heptaprenyl diphosphate synthase component I.	0.753
lin0119	lin2707	gene:17564431	gene:17567087	Putative tape-measure [Bacteriophage A118].	Lin2707 protein.	0.723
lin0119	lin2792	gene:17564431	gene:17567179	Putative tape-measure [Bacteriophage A118].	Lin2792 protein.	0.742
lin0997	lin0119	gene:17565327	gene:17564431	Lin0997 protein.	Putative tape-measure [Bacteriophage A118].	0.754
lin0997	lin1057	gene:17565327	gene:17565387	Lin0997 protein.	Lin1057 protein; Similar to B. subtilis YlaI protein.	0.639
lin0997	lin1305	gene:17565327	gene:17565636	Lin0997 protein.	Lin1305 protein.	0.697
lin0997	lin1341	gene:17565327	gene:17565672	Lin0997 protein.	Cell division suppressor protein YneA; Inhibits cell division during the SOS response. Affects a later stage of the cell division protein assembly, after the assembly of the Z ring, by probably suppressing recruitment of FtsL and/or DivIC to the division machinery; Belongs to the YneA family.	0.759
lin0997	lin1479	gene:17565327	gene:17565810	Lin0997 protein.	Similar to unknown proteins.	0.438
lin0997	lin2004	gene:17565327	gene:17566362	Lin0997 protein.	Lin2004 protein; Similar to conserved hypothetical proteins.	0.684
lin0997	lin2046	gene:17565327	gene:17566404	Lin0997 protein.	Lin2046 protein; Similar to heptaprenyl diphosphate synthase component I.	0.745
lin0997	lin2707	gene:17565327	gene:17567087	Lin0997 protein.	Lin2707 protein.	0.766
lin0997	lin2792	gene:17565327	gene:17567179	Lin0997 protein.	Lin2792 protein.	0.574
lin1057	lin0997	gene:17565387	gene:17565327	Lin1057 protein; Similar to B. subtilis YlaI protein.	Lin0997 protein.	0.639
lin1057	lin1305	gene:17565387	gene:17565636	Lin1057 protein; Similar to B. subtilis YlaI protein.	Lin1305 protein.	0.499
lin1057	lin1341	gene:17565387	gene:17565672	Lin1057 protein; Similar to B. subtilis YlaI protein.	Cell division suppressor protein YneA; Inhibits cell division during the SOS response. Affects a later stage of the cell division protein assembly, after the assembly of the Z ring, by probably suppressing recruitment of FtsL and/or DivIC to the division machinery; Belongs to the YneA family.	0.675