Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ML0068 | hns | gene:17573880 | gene:17573879 | Similar to M. tuberculosis Rv3850, hypothetical protein, TR:P96227 (EMBL:AL123456) (218 aa); Fasta score E(): 0, 78.3% identity in 217 aa overlap. | Histone-like protein; Similar to M. tuberculosis Rv3852, hns, HU-histone protein, TR:P96225 (EMBL:AL123456) (134 aa); Fasta score E(): 6.1e-12, 51.5% identity in 134 aa overlap. Contains PAKKX repeats similar to those in histone H1 proteins. | 0.493 |
ML0068 | menG | gene:17573880 | gene:17573878 | Similar to M. tuberculosis Rv3850, hypothetical protein, TR:P96227 (EMBL:AL123456) (218 aa); Fasta score E(): 0, 78.3% identity in 217 aa overlap. | Putative S-adenosylmethionine:2-demethylmenaquinone methyltransferase; Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions (By similarity). | 0.493 |
hns | ML0068 | gene:17573879 | gene:17573880 | Histone-like protein; Similar to M. tuberculosis Rv3852, hns, HU-histone protein, TR:P96225 (EMBL:AL123456) (134 aa); Fasta score E(): 6.1e-12, 51.5% identity in 134 aa overlap. Contains PAKKX repeats similar to those in histone H1 proteins. | Similar to M. tuberculosis Rv3850, hypothetical protein, TR:P96227 (EMBL:AL123456) (218 aa); Fasta score E(): 0, 78.3% identity in 217 aa overlap. | 0.493 |
hns | menG | gene:17573879 | gene:17573878 | Histone-like protein; Similar to M. tuberculosis Rv3852, hns, HU-histone protein, TR:P96225 (EMBL:AL123456) (134 aa); Fasta score E(): 6.1e-12, 51.5% identity in 134 aa overlap. Contains PAKKX repeats similar to those in histone H1 proteins. | Putative S-adenosylmethionine:2-demethylmenaquinone methyltransferase; Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions (By similarity). | 0.834 |
menG | ML0068 | gene:17573878 | gene:17573880 | Putative S-adenosylmethionine:2-demethylmenaquinone methyltransferase; Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions (By similarity). | Similar to M. tuberculosis Rv3850, hypothetical protein, TR:P96227 (EMBL:AL123456) (218 aa); Fasta score E(): 0, 78.3% identity in 217 aa overlap. | 0.493 |
menG | hns | gene:17573878 | gene:17573879 | Putative S-adenosylmethionine:2-demethylmenaquinone methyltransferase; Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions (By similarity). | Histone-like protein; Similar to M. tuberculosis Rv3852, hns, HU-histone protein, TR:P96225 (EMBL:AL123456) (134 aa); Fasta score E(): 6.1e-12, 51.5% identity in 134 aa overlap. Contains PAKKX repeats similar to those in histone H1 proteins. | 0.834 |
menG | rhlE | gene:17573878 | gene:17574636 | Putative S-adenosylmethionine:2-demethylmenaquinone methyltransferase; Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions (By similarity). | Similar to Mycobacterium tuberculosis putative ATP-dependent RNA helicase Rv3211 or MTCY07D11.15c (407 aa) TR:O05855 (EMBL:Z95120) fasta scores: E(): 0, 74.8% id in 531 aa, and to Klebsiella pneumoniae ATP-dependent RNA helicase deaD SW:DEAD_KLEPN (P33906) fasta scores: E(): 0, 43.2% id in 380 aa. Contains Pfam match to entry PF00271 helicase_C, Helicases conserved C-terminal domain. Contains Pfam match to entry PF00270 DEAD, DEAD/DEAH box helicase. Contains PS00017 ATP/GTP-binding site motif A (P-loop). Contains PS00039 DEAD-box subfamily ATP-dependent helicases signature. | 0.492 |
rhlE | menG | gene:17574636 | gene:17573878 | Similar to Mycobacterium tuberculosis putative ATP-dependent RNA helicase Rv3211 or MTCY07D11.15c (407 aa) TR:O05855 (EMBL:Z95120) fasta scores: E(): 0, 74.8% id in 531 aa, and to Klebsiella pneumoniae ATP-dependent RNA helicase deaD SW:DEAD_KLEPN (P33906) fasta scores: E(): 0, 43.2% id in 380 aa. Contains Pfam match to entry PF00271 helicase_C, Helicases conserved C-terminal domain. Contains Pfam match to entry PF00270 DEAD, DEAD/DEAH box helicase. Contains PS00017 ATP/GTP-binding site motif A (P-loop). Contains PS00039 DEAD-box subfamily ATP-dependent helicases signature. | Putative S-adenosylmethionine:2-demethylmenaquinone methyltransferase; Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions (By similarity). | 0.492 |