Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ML1328 | ML1329 | gene:17575162 | gene:17575163 | Possible DNA-binding protein; Catalyzes the covalent attachment of the prokaryotic ubiquitin-like protein modifier Pup to the proteasomal substrate proteins, thereby targeting them for proteasomal degradation. This tagging system is termed pupylation. The ligation reaction involves the side-chain carboxylate of the C-terminal glutamate of Pup and the side- chain amino group of a substrate lysine. | Conserved hypothetical protein; Does not seem to be involved in pupylation or substrate degradation; Belongs to the PafB family. | 0.969 |
| ML1328 | ML1330 | gene:17575162 | gene:17575164 | Possible DNA-binding protein; Catalyzes the covalent attachment of the prokaryotic ubiquitin-like protein modifier Pup to the proteasomal substrate proteins, thereby targeting them for proteasomal degradation. This tagging system is termed pupylation. The ligation reaction involves the side-chain carboxylate of the C-terminal glutamate of Pup and the side- chain amino group of a substrate lysine. | Possible DNA-binding protein; Does not seem to be involved in pupylation or substrate degradation; Belongs to the PafC family. | 0.966 |
| ML1328 | ML1332 | gene:17575162 | gene:17575166 | Possible DNA-binding protein; Catalyzes the covalent attachment of the prokaryotic ubiquitin-like protein modifier Pup to the proteasomal substrate proteins, thereby targeting them for proteasomal degradation. This tagging system is termed pupylation. The ligation reaction involves the side-chain carboxylate of the C-terminal glutamate of Pup and the side- chain amino group of a substrate lysine. | Membrane transport protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides. | 0.471 |
| ML1328 | helY | gene:17575162 | gene:17575167 | Possible DNA-binding protein; Catalyzes the covalent attachment of the prokaryotic ubiquitin-like protein modifier Pup to the proteasomal substrate proteins, thereby targeting them for proteasomal degradation. This tagging system is termed pupylation. The ligation reaction involves the side-chain carboxylate of the C-terminal glutamate of Pup and the side- chain amino group of a substrate lysine. | Probable helicase, Ski2 subfamily; Highly similar to many proposed Prokaryotic and Eukaryotic helicases including: Mycobacterium tuberculosis RV2092C SW:HELY_MYCTU (Q10701) (906 aa); Fasta score E(): 0, 82.5% identity in 922 aa overlap and Saccharomyces cerevisiae ATP-dependent RNA helicase Dob1 SW:MTR4_YEAST (P47047) (1073 aa); Fasta score E(): 0, 27.2% identity in 972 aa overlap. Contains Pfam match to entry PF00270 DEAD, DEAD/DEAH box helicase. Contains PS00017 ATP/GTP-binding site motif A (P-loop); Belongs to the helicase family. SKI2 subfamily. | 0.525 |
| ML1329 | ML1328 | gene:17575163 | gene:17575162 | Conserved hypothetical protein; Does not seem to be involved in pupylation or substrate degradation; Belongs to the PafB family. | Possible DNA-binding protein; Catalyzes the covalent attachment of the prokaryotic ubiquitin-like protein modifier Pup to the proteasomal substrate proteins, thereby targeting them for proteasomal degradation. This tagging system is termed pupylation. The ligation reaction involves the side-chain carboxylate of the C-terminal glutamate of Pup and the side- chain amino group of a substrate lysine. | 0.969 |
| ML1329 | ML1330 | gene:17575163 | gene:17575164 | Conserved hypothetical protein; Does not seem to be involved in pupylation or substrate degradation; Belongs to the PafB family. | Possible DNA-binding protein; Does not seem to be involved in pupylation or substrate degradation; Belongs to the PafC family. | 0.999 |
| ML1329 | ML1332 | gene:17575163 | gene:17575166 | Conserved hypothetical protein; Does not seem to be involved in pupylation or substrate degradation; Belongs to the PafB family. | Membrane transport protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides. | 0.470 |
| ML1329 | ML1334 | gene:17575163 | gene:17575168 | Conserved hypothetical protein; Does not seem to be involved in pupylation or substrate degradation; Belongs to the PafB family. | Possible conserved membrane protein; Highly similar to several e.g. Mycobacterium tuberculosis hypothetical protein RV2091C SW:YK91_MYCTU (Q10700) (244 aa); Fasta score E(): 0, 62.9% identity in 272 aa overlap. Note the product of this CDS contains a 7xPGQYG(P/S) repeat region similar to several bacterial protein calcium binding domains. Contains a possible membrane spanning hydrophobic domain. | 0.451 |
| ML1329 | helY | gene:17575163 | gene:17575167 | Conserved hypothetical protein; Does not seem to be involved in pupylation or substrate degradation; Belongs to the PafB family. | Probable helicase, Ski2 subfamily; Highly similar to many proposed Prokaryotic and Eukaryotic helicases including: Mycobacterium tuberculosis RV2092C SW:HELY_MYCTU (Q10701) (906 aa); Fasta score E(): 0, 82.5% identity in 922 aa overlap and Saccharomyces cerevisiae ATP-dependent RNA helicase Dob1 SW:MTR4_YEAST (P47047) (1073 aa); Fasta score E(): 0, 27.2% identity in 972 aa overlap. Contains Pfam match to entry PF00270 DEAD, DEAD/DEAH box helicase. Contains PS00017 ATP/GTP-binding site motif A (P-loop); Belongs to the helicase family. SKI2 subfamily. | 0.570 |
| ML1330 | ML1328 | gene:17575164 | gene:17575162 | Possible DNA-binding protein; Does not seem to be involved in pupylation or substrate degradation; Belongs to the PafC family. | Possible DNA-binding protein; Catalyzes the covalent attachment of the prokaryotic ubiquitin-like protein modifier Pup to the proteasomal substrate proteins, thereby targeting them for proteasomal degradation. This tagging system is termed pupylation. The ligation reaction involves the side-chain carboxylate of the C-terminal glutamate of Pup and the side- chain amino group of a substrate lysine. | 0.966 |
| ML1330 | ML1329 | gene:17575164 | gene:17575163 | Possible DNA-binding protein; Does not seem to be involved in pupylation or substrate degradation; Belongs to the PafC family. | Conserved hypothetical protein; Does not seem to be involved in pupylation or substrate degradation; Belongs to the PafB family. | 0.999 |
| ML1330 | ML1332 | gene:17575164 | gene:17575166 | Possible DNA-binding protein; Does not seem to be involved in pupylation or substrate degradation; Belongs to the PafC family. | Membrane transport protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides. | 0.470 |
| ML1330 | ML1334 | gene:17575164 | gene:17575168 | Possible DNA-binding protein; Does not seem to be involved in pupylation or substrate degradation; Belongs to the PafC family. | Possible conserved membrane protein; Highly similar to several e.g. Mycobacterium tuberculosis hypothetical protein RV2091C SW:YK91_MYCTU (Q10700) (244 aa); Fasta score E(): 0, 62.9% identity in 272 aa overlap. Note the product of this CDS contains a 7xPGQYG(P/S) repeat region similar to several bacterial protein calcium binding domains. Contains a possible membrane spanning hydrophobic domain. | 0.484 |
| ML1330 | helY | gene:17575164 | gene:17575167 | Possible DNA-binding protein; Does not seem to be involved in pupylation or substrate degradation; Belongs to the PafC family. | Probable helicase, Ski2 subfamily; Highly similar to many proposed Prokaryotic and Eukaryotic helicases including: Mycobacterium tuberculosis RV2092C SW:HELY_MYCTU (Q10701) (906 aa); Fasta score E(): 0, 82.5% identity in 922 aa overlap and Saccharomyces cerevisiae ATP-dependent RNA helicase Dob1 SW:MTR4_YEAST (P47047) (1073 aa); Fasta score E(): 0, 27.2% identity in 972 aa overlap. Contains Pfam match to entry PF00270 DEAD, DEAD/DEAH box helicase. Contains PS00017 ATP/GTP-binding site motif A (P-loop); Belongs to the helicase family. SKI2 subfamily. | 0.627 |
| ML1332 | ML1328 | gene:17575166 | gene:17575162 | Membrane transport protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides. | Possible DNA-binding protein; Catalyzes the covalent attachment of the prokaryotic ubiquitin-like protein modifier Pup to the proteasomal substrate proteins, thereby targeting them for proteasomal degradation. This tagging system is termed pupylation. The ligation reaction involves the side-chain carboxylate of the C-terminal glutamate of Pup and the side- chain amino group of a substrate lysine. | 0.471 |
| ML1332 | ML1329 | gene:17575166 | gene:17575163 | Membrane transport protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides. | Conserved hypothetical protein; Does not seem to be involved in pupylation or substrate degradation; Belongs to the PafB family. | 0.470 |
| ML1332 | ML1330 | gene:17575166 | gene:17575164 | Membrane transport protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides. | Possible DNA-binding protein; Does not seem to be involved in pupylation or substrate degradation; Belongs to the PafC family. | 0.470 |
| ML1332 | ML1334 | gene:17575166 | gene:17575168 | Membrane transport protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides. | Possible conserved membrane protein; Highly similar to several e.g. Mycobacterium tuberculosis hypothetical protein RV2091C SW:YK91_MYCTU (Q10700) (244 aa); Fasta score E(): 0, 62.9% identity in 272 aa overlap. Note the product of this CDS contains a 7xPGQYG(P/S) repeat region similar to several bacterial protein calcium binding domains. Contains a possible membrane spanning hydrophobic domain. | 0.578 |
| ML1332 | helY | gene:17575166 | gene:17575167 | Membrane transport protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides. | Probable helicase, Ski2 subfamily; Highly similar to many proposed Prokaryotic and Eukaryotic helicases including: Mycobacterium tuberculosis RV2092C SW:HELY_MYCTU (Q10701) (906 aa); Fasta score E(): 0, 82.5% identity in 922 aa overlap and Saccharomyces cerevisiae ATP-dependent RNA helicase Dob1 SW:MTR4_YEAST (P47047) (1073 aa); Fasta score E(): 0, 27.2% identity in 972 aa overlap. Contains Pfam match to entry PF00270 DEAD, DEAD/DEAH box helicase. Contains PS00017 ATP/GTP-binding site motif A (P-loop); Belongs to the helicase family. SKI2 subfamily. | 0.819 |
| ML1334 | ML1329 | gene:17575168 | gene:17575163 | Possible conserved membrane protein; Highly similar to several e.g. Mycobacterium tuberculosis hypothetical protein RV2091C SW:YK91_MYCTU (Q10700) (244 aa); Fasta score E(): 0, 62.9% identity in 272 aa overlap. Note the product of this CDS contains a 7xPGQYG(P/S) repeat region similar to several bacterial protein calcium binding domains. Contains a possible membrane spanning hydrophobic domain. | Conserved hypothetical protein; Does not seem to be involved in pupylation or substrate degradation; Belongs to the PafB family. | 0.451 |
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