Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ML1660 | rnc | gene:17575503 | gene:17575502 | Conserved hypothetical protein; Similar to several proteins of undefined function e.g. Mycobacterium tuberculosis RV2926C TR:YT26_MYCTU; To M.tuberculosis Rv2926c. | RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.952 |
| ML1660 | rplM | gene:17575503 | gene:17574183 | Conserved hypothetical protein; Similar to several proteins of undefined function e.g. Mycobacterium tuberculosis RV2926C TR:YT26_MYCTU; To M.tuberculosis Rv2926c. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.742 |
| ML1660 | rplQ | gene:17575503 | gene:17575808 | Conserved hypothetical protein; Similar to several proteins of undefined function e.g. Mycobacterium tuberculosis RV2926C TR:YT26_MYCTU; To M.tuberculosis Rv2926c. | Similar to M. tuberculosis 50S ribosomal protein L17 rplQ Rv3456c SW:RL17_MYCTU (O06323) (180 aa); Fasta score E(): 0, 81.9% identity in 171 aa overlap. Contains Pfam match to entry PF01196 Ribosomal_L17, Ribosomal protein L17. | 0.538 |
| ML1660 | rplS | gene:17575503 | gene:17575454 | Conserved hypothetical protein; Similar to several proteins of undefined function e.g. Mycobacterium tuberculosis RV2926C TR:YT26_MYCTU; To M.tuberculosis Rv2926c. | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.693 |
| ML1660 | rplV | gene:17575503 | gene:17575706 | Conserved hypothetical protein; Similar to several proteins of undefined function e.g. Mycobacterium tuberculosis RV2926C TR:YT26_MYCTU; To M.tuberculosis Rv2926c. | 50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). | 0.690 |
| ML1660 | rpmA | gene:17575503 | gene:17575304 | Conserved hypothetical protein; Similar to several proteins of undefined function e.g. Mycobacterium tuberculosis RV2926C TR:YT26_MYCTU; To M.tuberculosis Rv2926c. | Highly similar to many 50s ribosomal proteins (L27) including: Escherichia coli SW:RL27_ECOLI (P02427) (84 aa); Fasta score E(): 5.8e-16, 63.9% identity in 83 aa overlap and Mycobacterium tuberculosis RV2441C SW:RL27_MYCTU (Z8145) (86 aa); Fasta score E(): 3.3e-28, 93.8% identity in 81 aa overlap. Contains Pfam match to entry PF01016 Ribosomal_L27, Ribosomal L27 protein. Contains PS00831 Ribosomal protein L27 signature; Belongs to the bacterial ribosomal protein bL27 family. | 0.666 |
| ML1660 | rpmF | gene:17575503 | gene:17573988 | Conserved hypothetical protein; Similar to several proteins of undefined function e.g. Mycobacterium tuberculosis RV2926C TR:YT26_MYCTU; To M.tuberculosis Rv2926c. | Hypothetical protein (pseudogene); Probable ribosomal protein L32, rpmF,similar to many e.g. tr|Q9RL50|Q9RL50 PROBABLE 50S RIBOSOMAL PROTEIN (56 aa) E(): 1.5e-09; 63.462% identity in 52 aa overlap; Belongs to the bacterial ribosomal protein bL32 family. | 0.816 |
| ML1660 | rpsI | gene:17575503 | gene:17574184 | Conserved hypothetical protein; Similar to several proteins of undefined function e.g. Mycobacterium tuberculosis RV2926C TR:YT26_MYCTU; To M.tuberculosis Rv2926c. | Similar to M. tuberculosis rpsI, 30S ribosomal protein S9, SW:RS9_MYCTU (O06259) (151 aa); Fasta score E(): 0, 83.2% identity in 155 aa overlap. Previously sequenced as SW:RS9_MYCLE (P40828) (153 aa); Fasta score E(): 0, 99.3% identity in 153 aa overlap. Contains Pfam match to entry PF00380 Ribosomal_S9, Ribosomal protein S9/S16. Contains PS00360 Ribosomal protein S9 signature; Belongs to the universal ribosomal protein uS9 family. | 0.519 |
| ML1660 | rpsO | gene:17575503 | gene:17574679 | Conserved hypothetical protein; Similar to several proteins of undefined function e.g. Mycobacterium tuberculosis RV2926C TR:YT26_MYCTU; To M.tuberculosis Rv2926c. | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.571 |
| ML1660 | rpsP | gene:17575503 | gene:17575459 | Conserved hypothetical protein; Similar to several proteins of undefined function e.g. Mycobacterium tuberculosis RV2926C TR:YT26_MYCTU; To M.tuberculosis Rv2926c. | Highly similar to many 30s ribosomal proteins (S16) including: Bacillus subtilis SW:RS16_BACSU (P21474) (89 aa); Fasta score E(): 2.1e-10, 45.1% identity in 82 aa overlap and Mycobacterium tuberculosis SW:RS16_MYCTU (Q10795) (162 aa); Fasta score E(): 0, 82.5% identity in 160 aa overlap. Contains Pfam match to entry PF00886 Ribosomal_S16, Ribosomal protein S16. Contains PS00732 Ribosomal protein S16 signature; Belongs to the bacterial ribosomal protein bS16 family. | 0.727 |
| rnc | ML1660 | gene:17575502 | gene:17575503 | RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | Conserved hypothetical protein; Similar to several proteins of undefined function e.g. Mycobacterium tuberculosis RV2926C TR:YT26_MYCTU; To M.tuberculosis Rv2926c. | 0.952 |
| rnc | rplM | gene:17575502 | gene:17574183 | RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.960 |
| rnc | rplQ | gene:17575502 | gene:17575808 | RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | Similar to M. tuberculosis 50S ribosomal protein L17 rplQ Rv3456c SW:RL17_MYCTU (O06323) (180 aa); Fasta score E(): 0, 81.9% identity in 171 aa overlap. Contains Pfam match to entry PF01196 Ribosomal_L17, Ribosomal protein L17. | 0.949 |
| rnc | rplS | gene:17575502 | gene:17575454 | RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.973 |
| rnc | rplV | gene:17575502 | gene:17575706 | RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). | 0.958 |
| rnc | rpmA | gene:17575502 | gene:17575304 | RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | Highly similar to many 50s ribosomal proteins (L27) including: Escherichia coli SW:RL27_ECOLI (P02427) (84 aa); Fasta score E(): 5.8e-16, 63.9% identity in 83 aa overlap and Mycobacterium tuberculosis RV2441C SW:RL27_MYCTU (Z8145) (86 aa); Fasta score E(): 3.3e-28, 93.8% identity in 81 aa overlap. Contains Pfam match to entry PF01016 Ribosomal_L27, Ribosomal L27 protein. Contains PS00831 Ribosomal protein L27 signature; Belongs to the bacterial ribosomal protein bL27 family. | 0.957 |
| rnc | rpmF | gene:17575502 | gene:17573988 | RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | Hypothetical protein (pseudogene); Probable ribosomal protein L32, rpmF,similar to many e.g. tr|Q9RL50|Q9RL50 PROBABLE 50S RIBOSOMAL PROTEIN (56 aa) E(): 1.5e-09; 63.462% identity in 52 aa overlap; Belongs to the bacterial ribosomal protein bL32 family. | 0.950 |
| rnc | rpsI | gene:17575502 | gene:17574184 | RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | Similar to M. tuberculosis rpsI, 30S ribosomal protein S9, SW:RS9_MYCTU (O06259) (151 aa); Fasta score E(): 0, 83.2% identity in 155 aa overlap. Previously sequenced as SW:RS9_MYCLE (P40828) (153 aa); Fasta score E(): 0, 99.3% identity in 153 aa overlap. Contains Pfam match to entry PF00380 Ribosomal_S9, Ribosomal protein S9/S16. Contains PS00360 Ribosomal protein S9 signature; Belongs to the universal ribosomal protein uS9 family. | 0.955 |
| rnc | rpsO | gene:17575502 | gene:17574679 | RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.966 |
| rnc | rpsP | gene:17575502 | gene:17575459 | RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | Highly similar to many 30s ribosomal proteins (S16) including: Bacillus subtilis SW:RS16_BACSU (P21474) (89 aa); Fasta score E(): 2.1e-10, 45.1% identity in 82 aa overlap and Mycobacterium tuberculosis SW:RS16_MYCTU (Q10795) (162 aa); Fasta score E(): 0, 82.5% identity in 160 aa overlap. Contains Pfam match to entry PF00886 Ribosomal_S16, Ribosomal protein S16. Contains PS00732 Ribosomal protein S16 signature; Belongs to the bacterial ribosomal protein bS16 family. | 0.948 |
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