Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ML1637 | recG | gene:17575479 | gene:17575514 | Conserved hypothetical protein; Similar in parts to many. The N-terminus is similar to several ribonucleases e.g. Escherichia coli ribonuclease HI (EC 3.1.26.4) SW:RNH_ECOLI (P00647) (430 aa); BlastP Expect 8.7. The C-terminus is similar to many proteins belonging to the phosphoglycerate mutase family e.g. Escherichia coli SW:COBC_ECOLI (P52086) (430 aa); BlastP Expect 8.7. Similar over the whole range to Mycobacterium tuberculosis hypothetical protein RV2228C SW:YM28_MYCTU (Q10512) (364 aa); Fasta score E(): 0, 76.8% identity in 371 aa overlap. Contains Pfam match to entry PF00300 PGA [...] | ATP-dependent DNA helicase; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA) (By similarity); Belongs to the helicase family. RecG subfamily. | 0.413 |
| ML1637 | ssb | gene:17575479 | gene:17576550 | Conserved hypothetical protein; Similar in parts to many. The N-terminus is similar to several ribonucleases e.g. Escherichia coli ribonuclease HI (EC 3.1.26.4) SW:RNH_ECOLI (P00647) (430 aa); BlastP Expect 8.7. The C-terminus is similar to many proteins belonging to the phosphoglycerate mutase family e.g. Escherichia coli SW:COBC_ECOLI (P52086) (430 aa); BlastP Expect 8.7. Similar over the whole range to Mycobacterium tuberculosis hypothetical protein RV2228C SW:YM28_MYCTU (Q10512) (364 aa); Fasta score E(): 0, 76.8% identity in 371 aa overlap. Contains Pfam match to entry PF00300 PGA [...] | Similar to Escherichia coli single-strand binding protein SW:SSB_ECOLI (P02339) fasta scores: E(): 1.4e-09, 32.6% in 172 aa, and to Mycobacterium tuberculosis single-strand binding protein SW:SSB_MYCTU (P71711) fasta scores: E(): 0, 89.3% in 168 aa. Contains Pfam match to entry PF00436 SSB, Single-strand binding protein family. | 0.761 |
| dnaE | dnaZX | gene:17575038 | gene:17576196 | DNA polymerase III, [alpha] subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The alpha chain is the DNA polymerase (By similarity); Belongs to the DNA polymerase type-C family. DnaE subfamily. | DNA polymerase III, subunit [gamma/tau]; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.998 |
| dnaE | ssb | gene:17575038 | gene:17576550 | DNA polymerase III, [alpha] subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The alpha chain is the DNA polymerase (By similarity); Belongs to the DNA polymerase type-C family. DnaE subfamily. | Similar to Escherichia coli single-strand binding protein SW:SSB_ECOLI (P02339) fasta scores: E(): 1.4e-09, 32.6% in 172 aa, and to Mycobacterium tuberculosis single-strand binding protein SW:SSB_MYCTU (P71711) fasta scores: E(): 0, 89.3% in 168 aa. Contains Pfam match to entry PF00436 SSB, Single-strand binding protein family. | 0.979 |
| dnaZX | dnaE | gene:17576196 | gene:17575038 | DNA polymerase III, subunit [gamma/tau]; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | DNA polymerase III, [alpha] subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The alpha chain is the DNA polymerase (By similarity); Belongs to the DNA polymerase type-C family. DnaE subfamily. | 0.998 |
| dnaZX | ssb | gene:17576196 | gene:17576550 | DNA polymerase III, subunit [gamma/tau]; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | Similar to Escherichia coli single-strand binding protein SW:SSB_ECOLI (P02339) fasta scores: E(): 1.4e-09, 32.6% in 172 aa, and to Mycobacterium tuberculosis single-strand binding protein SW:SSB_MYCTU (P71711) fasta scores: E(): 0, 89.3% in 168 aa. Contains Pfam match to entry PF00436 SSB, Single-strand binding protein family. | 0.978 |
| priA | ssb | gene:17574369 | gene:17576550 | Putative primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. | Similar to Escherichia coli single-strand binding protein SW:SSB_ECOLI (P02339) fasta scores: E(): 1.4e-09, 32.6% in 172 aa, and to Mycobacterium tuberculosis single-strand binding protein SW:SSB_MYCTU (P71711) fasta scores: E(): 0, 89.3% in 168 aa. Contains Pfam match to entry PF00436 SSB, Single-strand binding protein family. | 0.778 |
| recG | ML1637 | gene:17575514 | gene:17575479 | ATP-dependent DNA helicase; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA) (By similarity); Belongs to the helicase family. RecG subfamily. | Conserved hypothetical protein; Similar in parts to many. The N-terminus is similar to several ribonucleases e.g. Escherichia coli ribonuclease HI (EC 3.1.26.4) SW:RNH_ECOLI (P00647) (430 aa); BlastP Expect 8.7. The C-terminus is similar to many proteins belonging to the phosphoglycerate mutase family e.g. Escherichia coli SW:COBC_ECOLI (P52086) (430 aa); BlastP Expect 8.7. Similar over the whole range to Mycobacterium tuberculosis hypothetical protein RV2228C SW:YM28_MYCTU (Q10512) (364 aa); Fasta score E(): 0, 76.8% identity in 371 aa overlap. Contains Pfam match to entry PF00300 PGA [...] | 0.413 |
| recG | ssb | gene:17575514 | gene:17576550 | ATP-dependent DNA helicase; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA) (By similarity); Belongs to the helicase family. RecG subfamily. | Similar to Escherichia coli single-strand binding protein SW:SSB_ECOLI (P02339) fasta scores: E(): 1.4e-09, 32.6% in 172 aa, and to Mycobacterium tuberculosis single-strand binding protein SW:SSB_MYCTU (P71711) fasta scores: E(): 0, 89.3% in 168 aa. Contains Pfam match to entry PF00436 SSB, Single-strand binding protein family. | 0.758 |
| rplI | rplJ | gene:17576548 | gene:17575744 | 50S ribosomal protein L9; Binds to the 23S rRNA. | 50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.996 |
| rplI | rpsF | gene:17576548 | gene:17576551 | 50S ribosomal protein L9; Binds to the 23S rRNA. | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.999 |
| rplI | rpsJ | gene:17576548 | gene:17575712 | 50S ribosomal protein L9; Binds to the 23S rRNA. | 30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.999 |
| rplI | rpsR | gene:17576548 | gene:17576549 | 50S ribosomal protein L9; Binds to the 23S rRNA. | 30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | 0.999 |
| rplI | ssb | gene:17576548 | gene:17576550 | 50S ribosomal protein L9; Binds to the 23S rRNA. | Similar to Escherichia coli single-strand binding protein SW:SSB_ECOLI (P02339) fasta scores: E(): 1.4e-09, 32.6% in 172 aa, and to Mycobacterium tuberculosis single-strand binding protein SW:SSB_MYCTU (P71711) fasta scores: E(): 0, 89.3% in 168 aa. Contains Pfam match to entry PF00436 SSB, Single-strand binding protein family. | 0.887 |
| rplJ | rplI | gene:17575744 | gene:17576548 | 50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 50S ribosomal protein L9; Binds to the 23S rRNA. | 0.996 |
| rplJ | rpsF | gene:17575744 | gene:17576551 | 50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.999 |
| rplJ | rpsJ | gene:17575744 | gene:17575712 | 50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.995 |
| rplJ | rpsR | gene:17575744 | gene:17576549 | 50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | 0.995 |
| rplJ | ssb | gene:17575744 | gene:17576550 | 50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | Similar to Escherichia coli single-strand binding protein SW:SSB_ECOLI (P02339) fasta scores: E(): 1.4e-09, 32.6% in 172 aa, and to Mycobacterium tuberculosis single-strand binding protein SW:SSB_MYCTU (P71711) fasta scores: E(): 0, 89.3% in 168 aa. Contains Pfam match to entry PF00436 SSB, Single-strand binding protein family. | 0.732 |
| rpsF | rplI | gene:17576551 | gene:17576548 | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 50S ribosomal protein L9; Binds to the 23S rRNA. | 0.999 |
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