Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
PM1316 | PM1318 | PM1316 | PM1318 | Unknown. | Unknown. | 0.417 |
PM1316 | trmB | PM1316 | PM1317 | Unknown. | Unknown; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. | 0.611 |
PM1316 | trmD | PM1316 | PM1297 | Unknown. | TrmD; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. | 0.414 |
PM1318 | PM1316 | PM1318 | PM1316 | Unknown. | Unknown. | 0.417 |
PM1318 | trmB | PM1318 | PM1317 | Unknown. | Unknown; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. | 0.567 |
ksgA | rlmB | PM1209 | PM1953 | KsgA; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | Unknown; Specifically methylates the ribose of guanosine 2251 in 23S rRNA. | 0.651 |
ksgA | rlmD | PM1209 | PM1866 | KsgA; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | Unknown; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily. | 0.553 |
ksgA | rlmH | PM1209 | PM1923 | KsgA; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | Unknown; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family. | 0.694 |
ksgA | rsmH | PM1209 | PM0134 | KsgA; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | Unknown; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. | 0.673 |
ksgA | rsmI | PM1209 | PM0645 | KsgA; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | Unknown; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | 0.690 |
ksgA | trmB | PM1209 | PM1317 | KsgA; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | Unknown; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. | 0.683 |
ksgA | trmD | PM1209 | PM1297 | KsgA; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | TrmD; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. | 0.613 |
ksgA | truB | PM1209 | PM0756 | KsgA; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | TruB; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.589 |
rlmB | ksgA | PM1953 | PM1209 | Unknown; Specifically methylates the ribose of guanosine 2251 in 23S rRNA. | KsgA; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.651 |
rlmB | rlmD | PM1953 | PM1866 | Unknown; Specifically methylates the ribose of guanosine 2251 in 23S rRNA. | Unknown; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily. | 0.538 |
rlmB | rlmH | PM1953 | PM1923 | Unknown; Specifically methylates the ribose of guanosine 2251 in 23S rRNA. | Unknown; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family. | 0.617 |
rlmB | rsmH | PM1953 | PM0134 | Unknown; Specifically methylates the ribose of guanosine 2251 in 23S rRNA. | Unknown; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. | 0.638 |
rlmB | rsmI | PM1953 | PM0645 | Unknown; Specifically methylates the ribose of guanosine 2251 in 23S rRNA. | Unknown; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | 0.561 |
rlmB | trmB | PM1953 | PM1317 | Unknown; Specifically methylates the ribose of guanosine 2251 in 23S rRNA. | Unknown; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. | 0.620 |
rlmB | trmD | PM1953 | PM1297 | Unknown; Specifically methylates the ribose of guanosine 2251 in 23S rRNA. | TrmD; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. | 0.504 |
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