Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
PM1894 | PM1895 | PM1894 | PM1895 | Unknown. | Unknown. | 0.991 |
PM1894 | PM1897 | PM1894 | PM1897 | Unknown. | Unknown. | 0.493 |
PM1894 | folA | PM1894 | PM1893 | Unknown. | FolA; Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis. | 0.688 |
PM1894 | proB | PM1894 | PM1896 | Unknown. | ProB; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate. | 0.553 |
PM1895 | PM1894 | PM1895 | PM1894 | Unknown. | Unknown. | 0.991 |
PM1895 | PM1897 | PM1895 | PM1897 | Unknown. | Unknown. | 0.493 |
PM1895 | folA | PM1895 | PM1893 | Unknown. | FolA; Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis. | 0.688 |
PM1895 | proB | PM1895 | PM1896 | Unknown. | ProB; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate. | 0.554 |
PM1897 | PM1894 | PM1897 | PM1894 | Unknown. | Unknown. | 0.493 |
PM1897 | PM1895 | PM1897 | PM1895 | Unknown. | Unknown. | 0.493 |
PM1897 | folA | PM1897 | PM1893 | Unknown. | FolA; Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis. | 0.428 |
PM1897 | proB | PM1897 | PM1896 | Unknown. | ProB; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate. | 0.700 |
argA | argD | PM0828 | PM0344 | ArgA. | ArgD; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | 0.912 |
argA | proB | PM0828 | PM1896 | ArgA. | ProB; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate. | 0.457 |
argA | proC | PM0828 | PM0095 | ArgA. | ProC; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline. | 0.440 |
argA | putA | PM0828 | PM0589 | ArgA. | PutA; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | 0.418 |
argA | thrA | PM0828 | PM0113 | ArgA. | ThrA; In the C-terminal section; belongs to the homoserine dehydrogenase family. | 0.565 |
argD | argA | PM0344 | PM0828 | ArgD; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | ArgA. | 0.912 |
argD | proA | PM0344 | PM0936 | ArgD; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | ProA; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family. | 0.483 |
argD | proB | PM0344 | PM1896 | ArgD; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | ProB; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate. | 0.464 |
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