STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cbibcbiB cobalamin biosynthesis protein B; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group. (290 aa)    
Predicted Functional Partners:
PAB2289
cobA/btuR ATP-corrinoid adenosyltransferase (EC 2.5.1.17).
 
  
 0.985
PAB1708
Hypothetical protein.
 
  
 0.970
hisC
hisC histidinol-phosphate aminotransferase.
 
   
 0.963
cobS
cobS cobalamin (5'-phosphate) synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.
 
  
 0.963
PAB2323
Nucleotidyltransferase, putative.
 
  
  0.958
PAB2326
cobT NaMN:DMB phosphoribosyltransferase; Belongs to the UPF0284 family.
 
  
 0.792
PAB2319
Hypothetical protein, DUF64 family.
 
     0.761
PAB3017
Hypothetical protein.
       0.616
PAB0911
Hypothetical protein.
 
   
 0.548
PAB2261
Cobalt transport protein, cbiQ family.
  
  
 0.518
Your Current Organism:
Pyrococcus abyssi
NCBI taxonomy Id: 272844
Other names: P. abyssi GE5, Pyrococcus abyssi GE5, Pyrococcus abyssi str. GE5, Pyrococcus abyssi str. Orsay, Pyrococcus abyssi strain GE5
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