STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PAB0564Predicted protein kinase, putative. (216 aa)    
Predicted Functional Partners:
PAB7359
Hypothetical protein, asnC family transcription regulator related.
 
     0.635
PAB1586
Oligosaccharyl transferase, STT3 subunit.
  
     0.632
PAB2000
Hypothetical protein.
  
     0.609
PAB1801
sgaA-like serine-glyoxylate aminotransferase related (EC 2.6.1.45) (serine--glyoxylate aminotransferase).
       0.567
PAB0974
Oligosaccharyl transferase, STT3 subunit.
  
     0.545
tfe
Probable archaeal transcription factor, related to transcription factor TFIIE, alpha subunit; Transcription factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Facilitates transcription initiation by enhancing TATA-box recognition by TATA-box-binding protein (Tbp), and transcription factor B (Tfb) and RNA polymerase recruitment. Not absolutely required for transcription in vitro, but particularly important in cases where Tbp or Tfb function is not optimal. It dynamically alters the nucleic acid-binding properties of RNA polymerases by stabilizing [...]
  
     0.482
PAB0654
Hypothetical protein, DUF54 family; Belongs to the UPF0201 family.
 
     0.477
PAB2202
Oligosaccharyl transferase, STT3 subunit.
  
     0.465
PAB2163
RPA41 subunit of the hetero-oligomeric complex involved in homologous recombination.
  
     0.447
PAB0953
Hypothetical protein, containing cell wall binding repeat 2.
  
   
 0.442
Your Current Organism:
Pyrococcus abyssi
NCBI taxonomy Id: 272844
Other names: P. abyssi GE5, Pyrococcus abyssi GE5, Pyrococcus abyssi str. GE5, Pyrococcus abyssi str. Orsay, Pyrococcus abyssi strain GE5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.