STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PAB0654Hypothetical protein, DUF54 family; Belongs to the UPF0201 family. (138 aa)    
Predicted Functional Partners:
PAB1135
Hypothetical protein; In vitro, binds efficiently double-stranded RNAs in a non- sequence specific manner.
  
   
 0.844
PAB1906
Hypothetical protein.
 
   
 0.804
purP
Putative carboligase of the ATP-grasp superfamily; Catalyzes the ATP- and formate-dependent formylation of 5- aminoimidazole-4-carboxamide-1-beta-d-ribofuranosyl 5'-monophosphate (AICAR) to 5-formaminoimidazole-4-carboxamide-1-beta-d-ribofuranosyl 5'-monophosphate (FAICAR) in the absence of folates. Belongs to the phosphohexose mutase family.
  
   
 0.775
purP-2
Hypothetical protein.
  
   
 0.771
thrB-2
aroK shikimate kinase.
  
   
 0.723
PAB0623
Hypothetical protein.
  
   
 0.650
PAB1012
Predicted nucleotide kinase.
 
    0.648
PAB1721
Hypothetical protein; Belongs to the UPF0282 family.
  
   
 0.641
PAB1429
Hypothetical protein.
  
   
 0.630
tyrS
tyrS tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 4 subfamily.
 
     0.613
Your Current Organism:
Pyrococcus abyssi
NCBI taxonomy Id: 272844
Other names: P. abyssi GE5, Pyrococcus abyssi GE5, Pyrococcus abyssi str. GE5, Pyrococcus abyssi str. Orsay, Pyrococcus abyssi strain GE5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.