STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trkAtrkA trk potassium uptake system protein; Part of a potassium transport system. (227 aa)    
Predicted Functional Partners:
trkH
trkG/H trk potassium uptake system protein.
 
 
 0.994
secD
secD protein-export membrane protein; Involved in protein export.
 
    0.886
secF
secF-like protein-export membrane related protein; Involved in protein export.
       0.856
moaE
moaE molybdopterin synthase, large chain; Converts molybdopterin precursor Z into molybdopterin. This requires the incorporation of two sulfur atoms into precursor Z to generate a dithiolene group. The sulfur is provided by MoaD (By similarity); Belongs to the MoaE family.
  
    0.810
atpA
atpA intein containing archaeal/vacuolar-type H+-transporting ATP synthase, subunit A; Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal alpha chain is a catalytic subunit; Belongs to the ATPase alpha/beta chains family.
       0.764
atpE
atpE archaeal/vacuolar-type H+-transporting ATP synthase, subunit E; Produces ATP from ADP in the presence of a proton gradient across the membrane.
 
     0.711
fba
Archaeal fructose 1,6-bisphosphate aldolase class 1A; Belongs to the DeoC/FbaB aldolase family.
   
  
 0.685
PAB1181
atpK archaeal/vacuolar-type H+-ATPase subunit K.
 
   
 0.682
atpC
atpC archaeal/vacuolar-type H+-transporting ATP synthase, subunit C; Produces ATP from ADP in the presence of a proton gradient across the membrane.
       0.672
atpF
atpF archaeal/vacuolar-type H+-transporting ATP synthase, subunit F; Produces ATP from ADP in the presence of a proton gradient across the membrane.
       0.672
Your Current Organism:
Pyrococcus abyssi
NCBI taxonomy Id: 272844
Other names: P. abyssi GE5, Pyrococcus abyssi GE5, Pyrococcus abyssi str. GE5, Pyrococcus abyssi str. Orsay, Pyrococcus abyssi strain GE5
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