STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mdhMdh malate dehydrogenase. (362 aa)    
Predicted Functional Partners:
mae
NAD-dependent malate oxidoreductase (malic enzyme) (EC 1.1.1.38).
     
 0.812
gap
Gap glyceraldehyde 3-phosphate dehydrogenase.
  
  
 0.711
glnA
glnA glutamine synthetase; Probably involved in nitrogen metabolism via ammonium assimilation. Catalyzes the ATP-dependent biosynthesis of glutamine from glutamate and ammonia.
     
 0.611
PAB1790
Hypothetical protein.
       0.603
PAB1789
ATPase of the AAA+ family.
     
 0.582
PAB2388
Dipeptidase.
  
    0.539
cheR
cheR chemotaxis protein methyltransferase.
     
 0.532
cheW
cheW purine-binding chemotaxis protein.
      
 0.510
serA-like
serA D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95); Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
     
 0.460
Your Current Organism:
Pyrococcus abyssi
NCBI taxonomy Id: 272844
Other names: P. abyssi GE5, Pyrococcus abyssi GE5, Pyrococcus abyssi str. GE5, Pyrococcus abyssi str. Orsay, Pyrococcus abyssi strain GE5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.