STRINGSTRING
XP_003673055.1 protein (Naumovozyma castellii) - STRING interaction network
"XP_003673055.1" - 60S ribosome subunit biogenesis protein NIP7 in Naumovozyma castellii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_003673055.160S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly (181 aa)    
Predicted Functional Partners:
XP_003677542.1
Uncharacterized protein; Ancestral locus Anc_2.247; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family (490 aa)
   
 
  0.997
XP_003677497.1
Uncharacterized protein; Ancestral locus Anc_2.167 (224 aa)
     
 
  0.996
XP_003674911.1
Uncharacterized protein; Ancestral locus Anc_8.137 (261 aa)
     
 
  0.992
YTM1
Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome (456 aa)
     
 
  0.990
XP_003674658.1
Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit (646 aa)
     
 
  0.987
XP_003673097.1
Uncharacterized protein; Ancestral locus Anc_5.233 (196 aa)
     
 
  0.986
XP_003673603.1
Uncharacterized protein; Ancestral locus Anc_5.278 (385 aa)
     
 
  0.985
TIF6
Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family (245 aa)
     
 
  0.985
XP_003677059.1
RNA helicase; Ancestral locus Anc_5.40 (508 aa)
     
 
  0.985
XP_003674987.1
Uncharacterized protein; Ancestral locus Anc_3.129 (293 aa)
     
 
  0.984
Your Current Organism:
Naumovozyma castellii
NCBI taxonomy Id: 27288
Other names: AS 2.2404, ATCC 76901, CBS 4309, CCRC 22586, DBVPG 6298, N. castellii, NRRL Y-12630, Naumovia castellii, Naumovozyma castellii, Naumovozyma castellii Kurtzman 2008, Saccharomyces castellii, Saccharomyces castellii Capriotti
Server load: low (30%) [HD]