Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ADE85102.1 | cheA1 | RCAP_rcc01356 | RCAP_rcc01353 | CheW-like domain protein. | Chemotaxis protein CheA-1. | 0.997 |
ADE85102.1 | cheA2 | RCAP_rcc01356 | RCAP_rcc01765 | CheW-like domain protein. | Chemotaxis protein CheA-2. | 0.994 |
ADE85102.1 | cheB1 | RCAP_rcc01356 | RCAP_rcc01358 | CheW-like domain protein. | Chemotaxis response regulator protein-glutamate methylesterase CheB-1; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | 0.990 |
ADE85102.1 | cheD | RCAP_rcc01356 | RCAP_rcc01760 | CheW-like domain protein. | Chemoreceptor glutamine deamidase CheD; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis; Belongs to the CheD family. | 0.878 |
ADE85102.1 | cheR1 | RCAP_rcc01356 | RCAP_rcc00782 | CheW-like domain protein. | Chemotaxis protein methyltransferase CheR-1. | 0.993 |
ADE85102.1 | cheW1 | RCAP_rcc01356 | RCAP_rcc01354 | CheW-like domain protein. | Chemotaxis protein CheW-1. | 0.988 |
ADE85102.1 | cheW2 | RCAP_rcc01356 | RCAP_rcc01764 | CheW-like domain protein. | Chemotaxis protein CheW-2. | 0.925 |
ADE85102.1 | flhA | RCAP_rcc01356 | RCAP_rcc00056 | CheW-like domain protein. | Flagellar biosynthesis protein FlhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family. | 0.587 |
ADE85102.1 | fliG | RCAP_rcc01356 | RCAP_rcc02158 | CheW-like domain protein. | Flagellar motor switch protein FliG. | 0.660 |
ADE85102.1 | fliN | RCAP_rcc01356 | RCAP_rcc03480 | CheW-like domain protein. | Flagellar motor switch protein FliN. | 0.560 |
cheA1 | ADE85102.1 | RCAP_rcc01353 | RCAP_rcc01356 | Chemotaxis protein CheA-1. | CheW-like domain protein. | 0.997 |
cheA1 | cheA2 | RCAP_rcc01353 | RCAP_rcc01765 | Chemotaxis protein CheA-1. | Chemotaxis protein CheA-2. | 0.929 |
cheA1 | cheB1 | RCAP_rcc01353 | RCAP_rcc01358 | Chemotaxis protein CheA-1. | Chemotaxis response regulator protein-glutamate methylesterase CheB-1; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | 0.999 |
cheA1 | cheD | RCAP_rcc01353 | RCAP_rcc01760 | Chemotaxis protein CheA-1. | Chemoreceptor glutamine deamidase CheD; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis; Belongs to the CheD family. | 0.946 |
cheA1 | cheR1 | RCAP_rcc01353 | RCAP_rcc00782 | Chemotaxis protein CheA-1. | Chemotaxis protein methyltransferase CheR-1. | 0.999 |
cheA1 | cheW1 | RCAP_rcc01353 | RCAP_rcc01354 | Chemotaxis protein CheA-1. | Chemotaxis protein CheW-1. | 0.999 |
cheA1 | cheW2 | RCAP_rcc01353 | RCAP_rcc01764 | Chemotaxis protein CheA-1. | Chemotaxis protein CheW-2. | 0.993 |
cheA1 | flhA | RCAP_rcc01353 | RCAP_rcc00056 | Chemotaxis protein CheA-1. | Flagellar biosynthesis protein FlhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family. | 0.831 |
cheA1 | fliG | RCAP_rcc01353 | RCAP_rcc02158 | Chemotaxis protein CheA-1. | Flagellar motor switch protein FliG. | 0.892 |
cheA1 | fliN | RCAP_rcc01353 | RCAP_rcc03480 | Chemotaxis protein CheA-1. | Flagellar motor switch protein FliN. | 0.773 |
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