Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| bioF | bioY | RCAP_rcc03364 | RCAP_rcc03249 | 8-amino-7-oxononanoate synthase. | BioY family protein; Central protein that confers the ability to take up biotin on E.coli; while biotin transport requires BioM at very low (pM) concentrations at higher (nM) concentrations expression of BioY alone suffices for uptake. | 0.778 |
| bioF | cbiO3 | RCAP_rcc03364 | RCAP_rcc03251 | 8-amino-7-oxononanoate synthase. | Cobalt ABC transporter, ATP-binding protein CbiO-3; Required for biotin uptake under very low (pM) biotin concentrations but not under higher (nM) concentrations. | 0.612 |
| bioF | cbiQ3 | RCAP_rcc03364 | RCAP_rcc03250 | 8-amino-7-oxononanoate synthase. | Cobalt ABC transporter, permease protein CbiQ-3; Probably involved in biotin uptake, although complementation experiments in E.coli do not indicate a clear role. | 0.651 |
| bioF | dapA | RCAP_rcc03364 | RCAP_rcc00379 | 8-amino-7-oxononanoate synthase. | Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). | 0.763 |
| bioY | bioF | RCAP_rcc03249 | RCAP_rcc03364 | BioY family protein; Central protein that confers the ability to take up biotin on E.coli; while biotin transport requires BioM at very low (pM) concentrations at higher (nM) concentrations expression of BioY alone suffices for uptake. | 8-amino-7-oxononanoate synthase. | 0.778 |
| bioY | cbiO2 | RCAP_rcc03249 | RCAP_rcc02034 | BioY family protein; Central protein that confers the ability to take up biotin on E.coli; while biotin transport requires BioM at very low (pM) concentrations at higher (nM) concentrations expression of BioY alone suffices for uptake. | Cobalt ABC transporter, ATP-binding protein CbiO-2; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import. The complex confers cobalt uptake upon expression in E.coli; can also transport nickel with a very low affinity. Presumably responsible for energy coupling to the transport system. | 0.751 |
| bioY | cbiO3 | RCAP_rcc03249 | RCAP_rcc03251 | BioY family protein; Central protein that confers the ability to take up biotin on E.coli; while biotin transport requires BioM at very low (pM) concentrations at higher (nM) concentrations expression of BioY alone suffices for uptake. | Cobalt ABC transporter, ATP-binding protein CbiO-3; Required for biotin uptake under very low (pM) biotin concentrations but not under higher (nM) concentrations. | 0.999 |
| bioY | cbiQ1 | RCAP_rcc03249 | RCAP_rcc01033 | BioY family protein; Central protein that confers the ability to take up biotin on E.coli; while biotin transport requires BioM at very low (pM) concentrations at higher (nM) concentrations expression of BioY alone suffices for uptake. | Cobalt ABC transporter, permease protein CbiQ-1; Part of the energy-coupling factor (ECF) transporter complex NikMNQO involved in nickel import. The complex confers nickel uptake upon expression in E.coli; can also transport cobalt with a very low affinity. | 0.848 |
| bioY | cbiQ2 | RCAP_rcc03249 | RCAP_rcc02035 | BioY family protein; Central protein that confers the ability to take up biotin on E.coli; while biotin transport requires BioM at very low (pM) concentrations at higher (nM) concentrations expression of BioY alone suffices for uptake. | Cobalt ABC transporter, permease protein CbiQ-2; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import. The complex confers cobalt uptake upon expression in E.coli; can also transport nickel with a very low affinity; Belongs to the CbiQ family. | 0.705 |
| bioY | cbiQ3 | RCAP_rcc03249 | RCAP_rcc03250 | BioY family protein; Central protein that confers the ability to take up biotin on E.coli; while biotin transport requires BioM at very low (pM) concentrations at higher (nM) concentrations expression of BioY alone suffices for uptake. | Cobalt ABC transporter, permease protein CbiQ-3; Probably involved in biotin uptake, although complementation experiments in E.coli do not indicate a clear role. | 0.999 |
| bioY | cydC | RCAP_rcc03249 | RCAP_rcc03253 | BioY family protein; Central protein that confers the ability to take up biotin on E.coli; while biotin transport requires BioM at very low (pM) concentrations at higher (nM) concentrations expression of BioY alone suffices for uptake. | Cysteine ABC transporter, permease/ATP-binding protein CydC. | 0.542 |
| bioY | cydD | RCAP_rcc03249 | RCAP_rcc03252 | BioY family protein; Central protein that confers the ability to take up biotin on E.coli; while biotin transport requires BioM at very low (pM) concentrations at higher (nM) concentrations expression of BioY alone suffices for uptake. | Cysteine ABC transporter, permease/ATP-binding protein CydD. | 0.552 |
| bioY | dapA | RCAP_rcc03249 | RCAP_rcc00379 | BioY family protein; Central protein that confers the ability to take up biotin on E.coli; while biotin transport requires BioM at very low (pM) concentrations at higher (nM) concentrations expression of BioY alone suffices for uptake. | Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). | 0.652 |
| cbiO2 | bioY | RCAP_rcc02034 | RCAP_rcc03249 | Cobalt ABC transporter, ATP-binding protein CbiO-2; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import. The complex confers cobalt uptake upon expression in E.coli; can also transport nickel with a very low affinity. Presumably responsible for energy coupling to the transport system. | BioY family protein; Central protein that confers the ability to take up biotin on E.coli; while biotin transport requires BioM at very low (pM) concentrations at higher (nM) concentrations expression of BioY alone suffices for uptake. | 0.751 |
| cbiO2 | cbiO3 | RCAP_rcc02034 | RCAP_rcc03251 | Cobalt ABC transporter, ATP-binding protein CbiO-2; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import. The complex confers cobalt uptake upon expression in E.coli; can also transport nickel with a very low affinity. Presumably responsible for energy coupling to the transport system. | Cobalt ABC transporter, ATP-binding protein CbiO-3; Required for biotin uptake under very low (pM) biotin concentrations but not under higher (nM) concentrations. | 0.564 |
| cbiO2 | cbiQ1 | RCAP_rcc02034 | RCAP_rcc01033 | Cobalt ABC transporter, ATP-binding protein CbiO-2; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import. The complex confers cobalt uptake upon expression in E.coli; can also transport nickel with a very low affinity. Presumably responsible for energy coupling to the transport system. | Cobalt ABC transporter, permease protein CbiQ-1; Part of the energy-coupling factor (ECF) transporter complex NikMNQO involved in nickel import. The complex confers nickel uptake upon expression in E.coli; can also transport cobalt with a very low affinity. | 0.994 |
| cbiO2 | cbiQ2 | RCAP_rcc02034 | RCAP_rcc02035 | Cobalt ABC transporter, ATP-binding protein CbiO-2; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import. The complex confers cobalt uptake upon expression in E.coli; can also transport nickel with a very low affinity. Presumably responsible for energy coupling to the transport system. | Cobalt ABC transporter, permease protein CbiQ-2; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import. The complex confers cobalt uptake upon expression in E.coli; can also transport nickel with a very low affinity; Belongs to the CbiQ family. | 0.999 |
| cbiO2 | cbiQ3 | RCAP_rcc02034 | RCAP_rcc03250 | Cobalt ABC transporter, ATP-binding protein CbiO-2; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import. The complex confers cobalt uptake upon expression in E.coli; can also transport nickel with a very low affinity. Presumably responsible for energy coupling to the transport system. | Cobalt ABC transporter, permease protein CbiQ-3; Probably involved in biotin uptake, although complementation experiments in E.coli do not indicate a clear role. | 0.891 |
| cbiO2 | cobL | RCAP_rcc02034 | RCAP_rcc02042 | Cobalt ABC transporter, ATP-binding protein CbiO-2; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import. The complex confers cobalt uptake upon expression in E.coli; can also transport nickel with a very low affinity. Presumably responsible for energy coupling to the transport system. | precorrin-6Y C5,15-methyltransferase (decarboxylating). | 0.716 |
| cbiO3 | bioF | RCAP_rcc03251 | RCAP_rcc03364 | Cobalt ABC transporter, ATP-binding protein CbiO-3; Required for biotin uptake under very low (pM) biotin concentrations but not under higher (nM) concentrations. | 8-amino-7-oxononanoate synthase. | 0.612 |
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