STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
osmCIMG reference gene:2512955600; PFAM: OsmC-like protein; TIGRFAM: peroxiredoxin, OsmC subfamily. (140 aa)    
Predicted Functional Partners:
RSP_1252
2-nitropropane dioxygenase-like protein; IMG reference gene:2512956296; PFAM: 2-nitropropane dioxygenase.
      
 0.779
glgX
Glycosidase; IMG reference gene:2512954155; PFAM: Alpha amylase, catalytic domain; Carbohydrate-binding module 48 (Isoamylase N-terminal domain); TIGRFAM: glycogen debranching enzyme GlgX; Belongs to the glycosyl hydrolase 13 family.
   
  
 0.763
RSP_1270
Hypothetical protein; IMG reference gene:2512956314; PFAM: CsbD-like; truncated by 9 aa; Belongs to the UPF0337 (CsbD) family.
  
  
 0.721
gor
NADPH-glutathione reductase; Maintains high levels of reduced glutathione.
     
 0.712
dnaQ
Putative DNA polymerase III, epsilon subunit-related 3'-5' exonuclease; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease.
      
 0.710
RSP_0329
Diguanylate cyclase with GAF sensor; IMG reference gene:2512955339; PFAM: GAF domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
   
    0.685
RSP_3513
Diguanylate cyclase with GAF sensor; IMG reference gene:2512957026; PFAM: GAF domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
   
    0.685
RSP_0156
Acyl-CoA dehydrogenase; IMG reference gene:2512955152; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain.
   
  
 0.645
RSP_3182
Acyl-CoA dehydrogenase; IMG reference gene:2512956691; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain.
   
  
 0.645
RSP_3223
Outer membrane receptor for ferrienterochelin and colicins; IMG reference gene:2512956735; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; old pseudo; removed pseudo tag since there is no evidence of ORF disruption or truncation.
      
 0.632
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.