STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DCOHMPterin dehydratase; IMG reference gene:2512955930; PFAM: Pterin 4 alpha carbinolamine dehydratase. (92 aa)    
Predicted Functional Partners:
RSP_0896
Hypothetical protein; IMG reference gene:2512955928; PFAM: Protein of unknown function, DUF482; trucated by 22 aa.
  
    0.836
RSP_0897
IMG reference gene:2512955929; PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain.
  
  
 0.826
RSP_0894
Putative translation initiation inhibitor, yjgF family; IMG reference gene:2512955926; PFAM: Endoribonuclease L-PSP.
  
    0.729
epi
methylmalonyl-CoA epimerase; Promiscuous isomerase that catalyzes epimerization of both ethylmalonyl-CoA and methylmalonyl-CoA. Has thus a dual role in the ethylmalonyl-CoA pathway for acetyl-CoA assimilation required for R.sphaeroides growth on acetate as sole carbon source.
  
  
 0.687
RSP_0895
Phosphodiesterase; IMG reference gene:2512955927; PFAM: Glycerophosphoryl diester phosphodiesterase family.
  
   0.670
TyrB
Aromatic amino acid aminotransferase apoenzyme; IMG reference gene:2512955918; PFAM: Aminotransferase class I and II.
  
  
 0.642
RSP_1023
Hypothetical protein; IMG reference gene:2512956062; PFAM: Protein of unknown function DUF58.
   
    0.502
RSP_0892
ABC protein toxin exporter, fused ATPase and inner membrane domain protein; IMG reference gene:2512955924; PFAM: ABC transporter transmembrane region; ABC transporter; TIGRFAM: type I secretion system ABC transporter, PrtD family.
  
    0.458
RSP_0893
IMG reference gene:2512955925; PFAM: HlyD family secretion protein; TIGRFAM: type I secretion membrane fusion protein, HlyD family.
  
    0.452
leuS
leucyl-tRNA synthetase; IMG reference gene:2512955869; PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; TIGRFAM: leucyl-tRNA synthetase, eubacterial and mitochondrial family; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.443
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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