STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylAD-xylose isomerase; IMG reference gene:2512956221; PFAM: Xylose isomerase-like TIM barrel; TIGRFAM: xylose isomerase; Belongs to the xylose isomerase family. (433 aa)    
Predicted Functional Partners:
xylB
Xylulose kinase; IMG reference gene:2512956222; PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; TIGRFAM: D-xylulose kinase.
 
 
 0.999
mtlK
Mannitol dehydrogenase; IMG reference gene:2512955086; PFAM: Mannitol dehydrogenase C-terminal domain; Mannitol dehydrogenase Rossmann domain.
  
 
 0.939
fruA
PTS system protein D-fructose-specific IICB componenst (F1P-forming), Frc family; IMG reference gene:2512953695; PFAM: Phosphotransferase system, EIIC; PTS system, Lactose/Cellobiose specific IIB subunit; TIGRFAM: PTS system, fructose-specific, IIB component; PTS system, fructose subfamily, IIC component; TC 4.A.2.1.1.
   
 
 0.937
RSP_2257
Putative Fructokinase; IMG reference gene:2512954186; PFAM: pfkB family carbohydrate kinase; Belongs to the carbohydrate kinase PfkB family.
  
 
 0.918
xylH
ABC sugar (xylose) transporter, inner membrane subunit; IMG reference gene:2512956224; PFAM: Branched-chain amino acid transport system / permease component; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.917
RSP_1178
Monosaccharide ABC transporter ATP-binding protein, CUT2 family; IMG reference gene:2512956223; PFAM: ABC transporter.
 
  
 0.897
xylF
Xylose-binding protein; IMG reference gene:2512956225; PFAM: family; TIGRFAM: D-xylose ABC transporter, substrate-binding protein.
 
  
 0.879
glk
Putative glucokinase; IMG reference gene:2512954837; PFAM: Glucokinase; TIGRFAM: glucokinase, proteobacterial type; Belongs to the bacterial glucokinase family.
     
 0.819
nagA
N-acetylglucosamine 6-phosphate deacetylase; IMG reference gene:2512956343; PFAM: Amidohydrolase family; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase.
   
  
 0.763
RSP_3671
D-tagatose 3-epimerase; IMG reference gene:2512957205; PFAM: Xylose isomerase-like TIM barrel.
  
  
 0.750
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.