Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| cbbL | cbbR | RSP_1282 | RSP_1286 | Ribulose 1,5-bisphosphate carboxylase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily. | RuBisCO operon transcriptional regulator, CbbR; IMG reference gene:2512956331; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain; Belongs to the LysR transcriptional regulatory family. | 0.955 |
| cbbL | cbbS | RSP_1282 | RSP_1281 | Ribulose 1,5-bisphosphate carboxylase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily. | IMG reference gene:2512956326; PFAM: Ribulose bisphosphate carboxylase, small chain. | 0.999 |
| cbbL | cbbX | RSP_1282 | RSP_1280 | Ribulose 1,5-bisphosphate carboxylase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily. | CbbX protein; IMG reference gene:2512956325; PFAM: ATPase family associated with various cellular activities (AAA); TIGRFAM: probable Rubsico expression protein CbbX; truncated by 32 aa. | 0.981 |
| cbbL | cbbZ | RSP_1282 | RSP_1278 | Ribulose 1,5-bisphosphate carboxylase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily. | Phosphoglycolate phosphatase; Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress. Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family. | 0.953 |
| cbbL | cfxA | RSP_1282 | RSP_1283 | Ribulose 1,5-bisphosphate carboxylase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily. | Fructose-bisphosphate aldolase; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis. | 0.947 |
| cbbL | gph | RSP_1282 | RSP_2504 | Ribulose 1,5-bisphosphate carboxylase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily. | Phosphoglycolate phosphatase; IMG reference gene:2512954449; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; 2-phosphoglycolate phosphatase, prokaryotic. | 0.913 |
| cbbL | pgk | RSP_1282 | RSP_4044 | Ribulose 1,5-bisphosphate carboxylase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily. | Phosphoglycerate kinase; IMG reference gene:2512954431; PFAM: Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family. | 0.919 |
| cbbL | prkA | RSP_1282 | RSP_1284 | Ribulose 1,5-bisphosphate carboxylase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily. | Phosphoribulokinase; IMG reference gene:2512956329; PFAM: Phosphoribulokinase / Uridine kinase family. | 0.994 |
| cbbL | prkB | RSP_1282 | RSP_3267 | Ribulose 1,5-bisphosphate carboxylase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily. | Phosphoribulokinase; IMG reference gene:2512956773; PFAM: Phosphoribulokinase / Uridine kinase family. | 0.988 |
| cbbL | rbpL | RSP_1282 | RSP_3271 | Ribulose 1,5-bisphosphate carboxylase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily. | Ribulose 1,5-bisphosphate carboxylase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type II subfamily. | 0.958 |
| cbbR | cbbL | RSP_1286 | RSP_1282 | RuBisCO operon transcriptional regulator, CbbR; IMG reference gene:2512956331; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain; Belongs to the LysR transcriptional regulatory family. | Ribulose 1,5-bisphosphate carboxylase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily. | 0.955 |
| cbbR | cbbS | RSP_1286 | RSP_1281 | RuBisCO operon transcriptional regulator, CbbR; IMG reference gene:2512956331; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain; Belongs to the LysR transcriptional regulatory family. | IMG reference gene:2512956326; PFAM: Ribulose bisphosphate carboxylase, small chain. | 0.952 |
| cbbR | cbbX | RSP_1286 | RSP_1280 | RuBisCO operon transcriptional regulator, CbbR; IMG reference gene:2512956331; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain; Belongs to the LysR transcriptional regulatory family. | CbbX protein; IMG reference gene:2512956325; PFAM: ATPase family associated with various cellular activities (AAA); TIGRFAM: probable Rubsico expression protein CbbX; truncated by 32 aa. | 0.841 |
| cbbR | cfxA | RSP_1286 | RSP_1283 | RuBisCO operon transcriptional regulator, CbbR; IMG reference gene:2512956331; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain; Belongs to the LysR transcriptional regulatory family. | Fructose-bisphosphate aldolase; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis. | 0.781 |
| cbbR | prkA | RSP_1286 | RSP_1284 | RuBisCO operon transcriptional regulator, CbbR; IMG reference gene:2512956331; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain; Belongs to the LysR transcriptional regulatory family. | Phosphoribulokinase; IMG reference gene:2512956329; PFAM: Phosphoribulokinase / Uridine kinase family. | 0.946 |
| cbbR | prkB | RSP_1286 | RSP_3267 | RuBisCO operon transcriptional regulator, CbbR; IMG reference gene:2512956331; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain; Belongs to the LysR transcriptional regulatory family. | Phosphoribulokinase; IMG reference gene:2512956773; PFAM: Phosphoribulokinase / Uridine kinase family. | 0.879 |
| cbbR | rbpL | RSP_1286 | RSP_3271 | RuBisCO operon transcriptional regulator, CbbR; IMG reference gene:2512956331; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain; Belongs to the LysR transcriptional regulatory family. | Ribulose 1,5-bisphosphate carboxylase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type II subfamily. | 0.818 |
| cbbS | cbbL | RSP_1281 | RSP_1282 | IMG reference gene:2512956326; PFAM: Ribulose bisphosphate carboxylase, small chain. | Ribulose 1,5-bisphosphate carboxylase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily. | 0.999 |
| cbbS | cbbR | RSP_1281 | RSP_1286 | IMG reference gene:2512956326; PFAM: Ribulose bisphosphate carboxylase, small chain. | RuBisCO operon transcriptional regulator, CbbR; IMG reference gene:2512956331; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain; Belongs to the LysR transcriptional regulatory family. | 0.952 |
| cbbS | cbbX | RSP_1281 | RSP_1280 | IMG reference gene:2512956326; PFAM: Ribulose bisphosphate carboxylase, small chain. | CbbX protein; IMG reference gene:2512956325; PFAM: ATPase family associated with various cellular activities (AAA); TIGRFAM: probable Rubsico expression protein CbbX; truncated by 32 aa. | 0.981 |
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