STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_1547Putative bacterioferritin-associated ferredoxin; IMG reference gene:2512953441; PFAM: BFD-like [2Fe-2S] binding domain. (84 aa)    
Predicted Functional Partners:
bfr
Bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family.
 
 
 0.992
RSP_1548
Imelysin; IMG reference gene:2512953442; PFAM: Imelysin.
 
  
 0.980
bfr-2
Bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family.
 
 
 0.951
RSP_6006
Hemin uptake protein; IMG reference gene:2512953443; PFAM: Hemin uptake protein hemP.
 
  
 0.873
exbB
Outer membrane transport energization protein ExbB; IMG reference gene:2512955952; PFAM: MotA/TolQ/ExbB proton channel family; TIGRFAM: tonB-system energizer ExbB; TC 2.C.1.1.1.
   
  
 0.831
RSP_0922
Outer membrane transport energization protein TonB; IMG reference gene:2512955954; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain; TC 2.C.1.1.1.
   
  
 0.817
RSP_1545
Putative thiol oxidoreductase with 2 cytochrome c heme-binding sites; IMG reference gene:2512953439; PFAM: Protein of unknown function (DUF1111).
 
    0.786
RSP_1544
Putative periplasmic lipoprotein; IMG reference gene:2512953438; PFAM: Imelysin.
 
    0.745
RSP_0443
IMG reference gene:2512955453; PFAM: Transcriptional regulator; TIGRFAM: Rrf2 family protein.
   
  
 0.717
RSP_1543
Hypothetical protein; IMG reference gene:2512953437; PFAM: Protein of unknown function (DUF1513).
 
    0.694
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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