STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_2361Putative integrase/resolvase recombinase protein phage-related integrase; IMG reference gene:2512954302; PFAM: Phage integrase family; Belongs to the 'phage' integrase family. (605 aa)    
Predicted Functional Partners:
RSP_2358
IMG reference gene:2512954299; PFAM: Caudovirus prohead protease; Phage capsid family; TIGRFAM: phage major capsid protein, HK97 family; phage prohead protease, HK97 family; extended by 111 aa.
 
    0.717
RSP_2360
Putative head portal protein, HK97 family; IMG reference gene:2512954301; PFAM: Phage portal protein; TIGRFAM: phage portal protein, HK97 family.
 
     0.673
RSP_2355
HNH nuclease / Probable phage PHI-105 holin-like protein; IMG reference gene:2512954297; PFAM: HNH endonuclease.
 
     0.662
RSP_1967
Restriction endonuclease; IMG reference gene:2512953879; PFAM: HNH endonuclease.
  
     0.627
RSP_2353
Phage terminase, small subunit, putative, P27 family; IMG reference gene:2512954291; PFAM: Phage terminase, small subunit; TIGRFAM: phage terminase, small subunit, putative, P27 family.
  
     0.581
RSP_2357
Hypothetical protein; IMG reference gene:2512954298.
       0.566
RSP_2359
IMG reference gene:2512954300; PFAM: Protein of unknown function (DUF3356).
       0.566
comF
Competence protein F; IMG reference gene:2512956239; PFAM: Phosphoribosyl transferase domain.
   
    0.463
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.456
RSP_2401
Putative 6-aminohexanoate-cyclic-dimer hydrolase; IMG reference gene:2512954345; PFAM: Amidase; Belongs to the amidase family.
   
    0.437
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.