STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_3437Aspartate aminotransferase; IMG reference gene:2512956948; PFAM: Aminotransferase class I and II. (406 aa)    
Predicted Functional Partners:
RSP_3438
Translation initiation inhibitor; IMG reference gene:2512956949; PFAM: Endoribonuclease L-PSP.
 
    0.860
RSP_3439
Aspartate aminotransferase; IMG reference gene:2512956950; PFAM: Aminotransferase class I and II.
 
   
0.817
RSP_1494
Putative aspartate aminotransferase; IMG reference gene:2512953386; PFAM: Aminotransferase class I and II.
  
   
 0.769
hisS
histidyl-tRNA synthetase; IMG reference gene:2512957061; PFAM: Anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: histidyl-tRNA synthetase.
  
 
 0.752
RSP_1495
DNA translocase FtsK; IMG reference gene:2512953387; PFAM: Ftsk gamma domain; FtsK/SpoIIIE family.
     
 0.734
dnaE
DNA polymerase III, alpha subunit; IMG reference gene:2512957063; PFAM: PHP domain; Bacterial DNA polymerase III alpha subunit; TIGRFAM: DNA-directed DNA polymerase III (polc).
  
 
 0.729
RSP_1497
Putative outer membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
     
 0.718
RSP_3440
IMG reference gene:2512956951; PFAM: short chain dehydrogenase.
  
   0.641
RSP_1849
Aspartate kinase; IMG reference gene:2512953758; PFAM: ACT domain; Amino acid kinase family; TIGRFAM: aspartate kinase, monofunctional class; aspartate kinase; Belongs to the aspartokinase family.
  
 0.640
RSP_3436
Transcriptional regulator, LysR-family; IMG reference gene:2512956947; PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family; Belongs to the LysR transcriptional regulatory family.
 
    0.599
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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