STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_3481Type VI secretion protein, VC_A0110 family; IMG reference gene:2512956991; PFAM: Bacterial protein of unknown function (DUF879); TIGRFAM: type VI secretion protein, VC_A0110 family. (621 aa)    
Predicted Functional Partners:
RSP_3485
Type VI secretion protein, VC_A0114 family; IMG reference gene:2512956995; PFAM: Bacterial protein of unknown function (DUF876); TIGRFAM: type VI secretion protein, VC_A0114 family.
 
 
 0.994
RSP_3486
Putative outer membrane protein, OmpA family; IMG reference gene:2512956996; PFAM: OmpA family; Uncharacterized protein conserved in bacteria (DUF2077); TIGRFAM: type IV / VI secretion system protein, DotU family; type VI secretion system OmpA/MotB family protein.
 
  
 0.994
RSP_3478
Type VI secretion protein, EvpB/VC_A0108 family; IMG reference gene:2512956988; PFAM: Protein of unknown function (DUF877); TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family.
 
  
 0.985
RSP_3482
Type VI secretion protein, VC_A0111 family; IMG reference gene:2512956992; PFAM: Protein of unknown function (DUF1305); TIGRFAM: type VI secretion protein, VC_A0111 family.
  
 0.982
RSP_3480
IMG reference gene:2512956990; PFAM: Gene 25-like lysozyme; TIGRFAM: type VI secretion system lysozyme-related protein.
 
  
 0.980
RSP_3484
IMG reference gene:2512956994; TIGRFAM: type VI secretion lipoprotein, VC_A0113 family.
 
  
 0.978
RSP_3477
Type VI secretion protein, VC_A0107 family; IMG reference gene:2512956987; PFAM: Protein of unknown function (DUF770); TIGRFAM: type VI secretion protein, VC_A0107 family.
 
  
 0.972
RSP_3483
FHA domain protein; IMG reference gene:2512956993; PFAM: FHA domain; TIGRFAM: type VI secretion system FHA domain protein.
 
  
 0.970
RSP_3479
Hemolysin-coregulated protein (uncharacterized); IMG reference gene:2512956989; PFAM: Protein of unknown function (DUF796); TIGRFAM: type VI secretion system effector, Hcp1 family.
 
  
 0.968
RSP_3476
Hypothetical protein; IMG reference gene:2512956986; PFAM: ImpA-related N-terminal; TIGRFAM: type VI secretion-associated protein, ImpA family.
 
  
 0.950
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.