STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_3510Propeptide domain-containing protein; IMG reference gene:2512957021; PFAM: Peptidase propeptide and YPEB domain. (117 aa)    
Predicted Functional Partners:
RSP_3512
Periplasmic sensor signal transduction histidine kinase; IMG reference gene:2512957023; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
  
 0.992
shp
Mono-heme class I cytochrome c; High-spin cytochrome. Transiently bind oxygen during autoxidation, which occurs with a half-life of 3 min with a 4-fold excess of O(2). Also binds carbon monoxide, azide and cyanide.
 
  
 0.936
RSP_3511
Two component transcriptional regulator, winged helix family; IMG reference gene:2512957022; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal.
 
  
 0.911
RSP_3431
Periplasmic sensor signal transduction histidine kinase; IMG reference gene:2512956942; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain.
  
  
 0.755
RSP_1232
Putative integral membrane protein; Catalyzes the oxidation of protoporphyrinogen IX to protoporphyrin IX. Is involved in the biosynthesis of tetrapyrrole molecules like heme and chlorophyll. Does not use oxygen or artificial electron acceptors such as menadione or benzoquinone. Belongs to the HemJ family.
   
  
 0.714
RSP_2020
DHC, diheme cytochrome c; IMG reference gene:2512953938; PFAM: Dihaem cytochrome c.
 
     0.593
expE1
IMG reference gene:2512957020; PFAM: Hemolysin-type calcium-binding repeat (2 copies); TIGRFAM: type 1 secretion C-terminal target domain (VC_A0849 subclass).
  
    0.558
RSP_2395
IMG reference gene:2512954339; PFAM: Cytochrome c; Di-haem cytochrome c peroxidase.
  
  
 0.549
RSP_1013
Putative Hemolysin; IMG reference gene:2512956051; PFAM: CBS domain; Domain of unknown function DUF21; Transporter associated domain.
   
    0.472
RSP_3597
CorC/Hlyc family protein with CBS domains; IMG reference gene:2512957110; PFAM: CBS domain; Transporter associated domain.
   
    0.469
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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