STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cerACommunity escape response protein; IMG reference gene:2512955114. (52 aa)    
Predicted Functional Partners:
cerI
Autoinducer synthesis protein; IMG reference gene:2512955115; PFAM: Autoinducer synthetase.
     
 0.869
cerR
Transcriptional regulator, LuxR family; IMG reference gene:2512955113; PFAM: Bacterial regulatory proteins, luxR family; Autoinducer binding domain.
       0.705
RSP_0725
Thioredoxin, thioldisulfide interchange protein; IMG reference gene:2512955748; PFAM: AhpC/TSA family.
      
 0.614
RSP_3095
RNA polymerase sigma-70 factor; IMG reference gene:2512956597; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
      
 0.613
clpA
Chaperonin clpA/B; IMG reference gene:2512954227; PFAM: ATPase family associated with various cellular activities (AAA); Clp amino terminal domain; AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; TIGRFAM: ATP-dependent Clp protease ATP-binding subunit clpA; Belongs to the ClpA/ClpB family.
      
 0.581
RSP_1489
Thioredoxin; IMG reference gene:2512953381; PFAM: Thioredoxin; TIGRFAM: thioredoxin.
      
 0.553
lexA
LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. Has been shown to bind to the direct repeat sequence 5'-GTT-N(7)-GTTC-3'. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.
      
 0.512
RSP_0124
Hypothetical protein; IMG reference gene:2512955116.
       0.508
RSP_6096
Transcriptional regulator, LuxR family; IMG reference gene:2512955112; PFAM: Bacterial regulatory proteins, luxR family; Autoinducer binding domain.
       0.472
trxA
Thioredoxin; IMG reference gene:2512953422; PFAM: Thioredoxin; TIGRFAM: thioredoxin; Belongs to the thioredoxin family.
      
 0.448
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.