node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RP141 | RP435 | gene:17555224 | gene:17555515 | DNA-DIRECTED RNA POLYMERASE BETA PRIME CHAIN (rpoC); DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | RIBOSOME-BINDING FACTOR A (rbfA); One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | 0.478 |
RP141 | RP501 | gene:17555224 | gene:17555581 | DNA-DIRECTED RNA POLYMERASE BETA PRIME CHAIN (rpoC); DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | TRNA PSEUDOURIDINE 55 SYNTHASE (truB); Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.766 |
RP141 | RP502 | gene:17555224 | gene:17555582 | DNA-DIRECTED RNA POLYMERASE BETA PRIME CHAIN (rpoC); DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Unknown. | 0.766 |
RP141 | RP503 | gene:17555224 | gene:17555583 | DNA-DIRECTED RNA POLYMERASE BETA PRIME CHAIN (rpoC); DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 30S RIBOSOMAL PROTEIN S15 (rpsO); One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.804 |
RP141 | RP504 | gene:17555224 | gene:17555584 | DNA-DIRECTED RNA POLYMERASE BETA PRIME CHAIN (rpoC); DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE (pnp); Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.746 |
RP141 | RP521 | gene:17555224 | gene:17555601 | DNA-DIRECTED RNA POLYMERASE BETA PRIME CHAIN (rpoC); DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 30S RIBOSOMAL PROTEIN S1 (rpsA); Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence (By similarity). | 0.984 |
RP141 | RP552 | gene:17555224 | gene:17555632 | DNA-DIRECTED RNA POLYMERASE BETA PRIME CHAIN (rpoC); DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | TRANSLATION INITIATION FACTOR IF-2 (infB); One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex (By similarity); Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.980 |
RP141 | RP553 | gene:17555224 | gene:17555633 | DNA-DIRECTED RNA POLYMERASE BETA PRIME CHAIN (rpoC); DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | N UTILIZATION SUBSTANCE PROTEIN A (nusA); Participates in both transcription termination and antitermination. | 0.997 |
RP163 | RP501 | gene:17555246 | gene:17555581 | CELL DIVISION PROTEIN FTSJ (ftsJ); Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit. | TRNA PSEUDOURIDINE 55 SYNTHASE (truB); Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.804 |
RP163 | RP502 | gene:17555246 | gene:17555582 | CELL DIVISION PROTEIN FTSJ (ftsJ); Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit. | Unknown. | 0.546 |
RP163 | RP521 | gene:17555246 | gene:17555601 | CELL DIVISION PROTEIN FTSJ (ftsJ); Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit. | 30S RIBOSOMAL PROTEIN S1 (rpsA); Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence (By similarity). | 0.881 |
RP163 | RP847 | gene:17555246 | gene:17555916 | CELL DIVISION PROTEIN FTSJ (ftsJ); Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit. | POSSIBLE PROTOPORPHYRINOGEN OXIDASE (hemK); Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; In the C-terminal section; belongs to the class I-like SAM- binding methyltransferase superfamily. TrmB family. | 0.884 |
RP435 | RP141 | gene:17555515 | gene:17555224 | RIBOSOME-BINDING FACTOR A (rbfA); One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | DNA-DIRECTED RNA POLYMERASE BETA PRIME CHAIN (rpoC); DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.478 |
RP435 | RP501 | gene:17555515 | gene:17555581 | RIBOSOME-BINDING FACTOR A (rbfA); One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | TRNA PSEUDOURIDINE 55 SYNTHASE (truB); Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.831 |
RP435 | RP502 | gene:17555515 | gene:17555582 | RIBOSOME-BINDING FACTOR A (rbfA); One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | Unknown. | 0.831 |
RP435 | RP503 | gene:17555515 | gene:17555583 | RIBOSOME-BINDING FACTOR A (rbfA); One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | 30S RIBOSOMAL PROTEIN S15 (rpsO); One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.936 |
RP435 | RP504 | gene:17555515 | gene:17555584 | RIBOSOME-BINDING FACTOR A (rbfA); One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE (pnp); Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.647 |
RP435 | RP552 | gene:17555515 | gene:17555632 | RIBOSOME-BINDING FACTOR A (rbfA); One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | TRANSLATION INITIATION FACTOR IF-2 (infB); One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex (By similarity); Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.983 |
RP435 | RP553 | gene:17555515 | gene:17555633 | RIBOSOME-BINDING FACTOR A (rbfA); One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | N UTILIZATION SUBSTANCE PROTEIN A (nusA); Participates in both transcription termination and antitermination. | 0.592 |
RP435 | RP847 | gene:17555515 | gene:17555916 | RIBOSOME-BINDING FACTOR A (rbfA); One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | POSSIBLE PROTOPORPHYRINOGEN OXIDASE (hemK); Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; In the C-terminal section; belongs to the class I-like SAM- binding methyltransferase superfamily. TrmB family. | 0.734 |